PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25517.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 139aa    MW: 15374 Da    PI: 6.3398
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25517.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.38.9e-471313658189
       GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskee 157
                s+ +k+++p + +   s e+l+++++ ++++P++kf+h+taNqaI ea+e+e+rvH+iD+di qG QWpa++qaL++R++g+p lRiTgvgs    s ++
  PK25517.1  13 SNSSKSFNPFPPN---SLEVLKIYQIVYQACPYIKFAHFTANQAIFEAFETESRVHVIDLDILQGYQWPAFMQALSARSGGSPFLRITGVGS----SIDS 105
                4445555555555...99**************************************************************************....9*** PP

       GRAS 158 leetgerLakfAeelgvpfefnvlvakrledl 189
                ++etg+ L+++A++l+vpfef++ v ++le l
  PK25517.1 106 VRETGRCLTELAHSLQVPFEFHA-VGEQLEHL 136
                ***********************.68888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.1891139IPR005202Transcription factor GRAS
PfamPF035143.1E-4413136IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
AATPTTTTTT TSSNSSKSFN PFPPNSLEVL KIYQIVYQAC PYIKFAHFTA NQAIFEAFET  60
ESRVHVIDLD ILQGYQWPAF MQALSARSGG SPFLRITGVG SSIDSVRETG RCLTELAHSL  120
QVPFEFHAVG EQLEHLRSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-322513691202Protein SCARECROW
5b3h_A3e-322513690201Protein SCARECROW
5b3h_D3e-322513690201Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045749.12e-73PREDICTED: DELLA protein RGL1-like
SwissprotG7L1664e-69RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2P5CJP52e-75A0A2P5CJP5_PARAD; GRAS transcription factor
STRINGXP_008441631.12e-72(Cucumis melo)
STRINGXP_004171790.12e-72(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-33GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]