PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25434.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 25446.6 Da PI: 9.7523 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 5.1e-05 | 85 | 106 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k F + L H+r H PK25434.1 85 ICHVCDKGFDSLRALFGHMRHH 106 5*******************99 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.4e-05 | 116 | 137 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + + H+++H PK25434.1 116 SCKECGKEFESLRAVTGHMKSH 137 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.8E-4 | 5 | 31 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.45E-6 | 6 | 35 | No hit | No description |
SMART | SM00355 | 0.31 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.66 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-5 | 9 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.21E-9 | 85 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 85 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 9.0E-7 | 85 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.18 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.2E-4 | 116 | 139 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-6 | 117 | 139 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEKDQEQKHV CKFCNKSFLN GKVLGGHMRC HGAKNSTKTE KKLNNIVHTN MEGGERVGYG 60 LRVNPKKSCK ISGGSTQETS EQEIICHVCD KGFDSLRALF GHMRHHSGNK RRKMVSCKEC 120 GKEFESLRAV TGHMKSHSER FRVPIESSEK LFGDSQHSGG GTSGLVKKKR SRRSRYNNNN 180 NTAAANNNNK ITPNSSVSNL SECSYYDNEY DQQEVEEVAV SLLMLSK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015879805.1 | 1e-64 | uncharacterized protein LOC107415907 | ||||
TrEMBL | A0A2P5ED78 | 4e-97 | A0A2P5ED78_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_010089610.1 | 5e-60 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13359 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 1e-20 | C2H2-like zinc finger protein |