PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25264.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 187aa    MW: 21334.2 Da    PI: 8.3273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25264.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14551354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               ++h+e+E+rRR+riNs f++Lr+l P a     kK++Ka+ L +++ ++k+L
  PK25264.1  5 KNHSEAEKRRRARINSHFDTLRSLTPGA-----KKMDKASLLAEVISHLKDL 51
               58*************************9.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.634251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-12551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-12554No hitNo description
Gene3DG3DSA:4.10.280.102.8E-14660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-15660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.5E-587138No hitNo description
CDDcd048735.06E-788151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
XEALKNHSEA EKRRRARINS HFDTLRSLTP GAKKMDKASL LAEVISHLKD LKRKTAETSE  60
DCTIPKDFDE VKVEPEDEME GRPYSIRVSL SCDYKPGLLS DLRQALDALQ LIIMRAEIAT  120
LGCRMKNVFV ITACNEDKVE DDDEFRRFHA RSIYLALRTV LDKFAVSEQF IGATLSNKKR  180
RASVFIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13674877Transcription factor MYC2
5gnj_B2e-13674877Transcription factor MYC2
5gnj_E2e-13674877Transcription factor MYC2
5gnj_F2e-13674877Transcription factor MYC2
5gnj_G2e-13674877Transcription factor MYC2
5gnj_I2e-13674877Transcription factor MYC2
5gnj_M2e-13674877Transcription factor MYC2
5gnj_N2e-13674877Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881324.16e-92transcription factor bHLH30-like
TrEMBLA0A2P5FF431e-106A0A2P5FF43_TREOI; Basic helix-loop-helix transcription factor
STRINGPOPTR_0019s11870.12e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-29bHLH family protein