PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 213aa MW: 22911.8 Da PI: 10.0769 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.4 | 5.7e-16 | 56 | 138 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ +++ ++++qCk+k+e+++kry+ + +++ + ++p++++l+ PK25248.1 56 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEDVARYVssraNSTKSPKTQTQCKNKIESMKKRYRSESTTDAS-------SWPLYSRLD 138 5*************************************88777778889999***************9999886.......499998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.4E-19 | 54 | 138 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDKENSIHHH HQSPSLLPNN TTIAAPLTAI PKEESPRKPF NGGGGNGGGD RLKRDEWSEG 60 AVSSLLEAYE SKWVLRNRAK LKGHDWEDVA RYVSSRANST KSPKTQTQCK NKIESMKKRY 120 RSESTTDASS WPLYSRLDLL LRGNGVSPAV AAAAAAATTS SPAQPTLPPM PPSHLATNNP 180 PLLLLEPPPP LPAPPPLIGT AQNSHGSNGV ERL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095991.1 | 1e-83 | trihelix transcription factor ASIL2 isoform X2 | ||||
TrEMBL | A0A2P5BX03 | 3e-92 | A0A2P5BX03_PARAD; Trihelix transcription factor | ||||
STRING | XP_010095991.1 | 6e-83 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4994 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 4e-54 | sequence-specific DNA binding transcription factors |