PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25041.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 404aa    MW: 45001.1 Da    PI: 7.1866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25041.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.3e-16246292455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+  ErrRRd+iN+++ +L+ l+P++      K++Ka+iLe A++++ksLq
  PK25041.1 246 LHSLSERRRRDKINKRIRTLKALIPNC-----NKVDKASILEDAIDHLKSLQ 292
                5999**********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-19241309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.701242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-18242305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-13246292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-16247296No hitNo description
SMARTSM003533.6E-17248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDTSGFVELV WENDEIVKRR PCPSNFISSQ RYSDNNTTEV PHVVVGGGNK RPGNTTAVPA  60
RNVFELFSSP KQLPNKSNGA CGRGDYDDDD DSDNHHRSKP RPVLLLNKDY LNNKSSERDL  120
QPPPERVLIM KNNNNKRVAV DDDNSMCLVP DNHQPHDQYD YHDYEDYPKN QEEAALVPSL  180
HSMGASNDYH NNGLPLLHTT TTATTTTTTT TTTTATTSNT STTSTSLEQD QDQELQPLPR  240
KRSAKLHSLS ERRRRDKINK RIRTLKALIP NCNKVDKASI LEDAIDHLKS LQFQLQMMMS  300
MGTGLNNVMN PMMAQYLMSY FSPIMAMAMA SSSSSPLVGS RLGGVHQMYG FPFPQGVSSS  360
ASQTSQSSPP IFTRPWHVSP SSSSSSPQIP PSFPLSYYYA PQNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239254RKRSAKLHSLSERRRR
2250255ERRRRD
3251256RRRRDK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3229422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-09phytochrome interacting factor 3