PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25034.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TALE
Protein Properties Length: 418aa    MW: 48013.2 Da    PI: 6.8666
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25034.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-093453802055
                HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  PK25034.1 345 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 380
                5679*****************************885 PP
2ELK36.69.6e-13300321122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK++LlrKYsgyL++LkqE+s
  PK25034.1 300 ELKNHLLRKYSGYLSGLKQELS 321
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.8E-20154198IPR005540KNOX1
PfamPF037901.7E-21155196IPR005540KNOX1
SMARTSM012562.6E-27205256IPR005541KNOX2
PfamPF037911.7E-22210254IPR005541KNOX2
SMARTSM011881.1E-6300321IPR005539ELK domain
PfamPF037891.1E-9300321IPR005539ELK domain
PROSITE profilePS5121310.999300320IPR005539ELK domain
PROSITE profilePS5007112.908320383IPR001356Homeobox domain
SuperFamilySSF466891.71E-19321395IPR009057Homeodomain-like
SMARTSM003897.7E-13322387IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-27325386IPR009057Homeodomain-like
CDDcd000865.87E-12332384No hitNo description
PfamPF059201.6E-16340379IPR008422Homeobox KN domain
PROSITE patternPS000270358381IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MPVMNTNNNQ MEESTGSGGR GNFLYSSINS MGGGNNSNYG RGNHDHRQLS VNSFHLQSTT  60
AGGDHCSTGG FPPPHPQSHH NLNNPHQPIV KTEATTSHHH HNQHIQKFHY DPNLMTTRDH  120
HHQTVQHQVL HHQLPESQED HDQPQHHRSI KEVETIKDKI IAHPQYSNLL EAYMDCQKVG  180
APPDVVARLG AARQDFESRQ RSLVSSRDSS KDPELDQFME AYYDLLVKYR DELTRPIQEA  240
MDFMRRIETQ LNMLNNGGPV RIFTSEVEKC EGVGSSEEDQ DNSGGETEVA EIDPRAEDRE  300
LKNHLLRKYS GYLSGLKQEL SKKKKKGKLP KDARQKLLNW WELHYKWPYP SETEKVALAE  360
STGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA ALYMDGHYMG DGHYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109441.10.0homeobox protein knotted-1-like 2
RefseqXP_024029913.10.0homeobox protein knotted-1-like 2
RefseqXP_024029914.10.0homeobox protein knotted-1-like 2
RefseqXP_024029915.10.0homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A2P5EL320.0A0A2P5EL32_TREOI; Knotted-like homeobox transcription factor
STRINGXP_010109441.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-137KNOTTED-like from Arabidopsis thaliana