PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK24855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 388aa MW: 42531.9 Da PI: 8.5867 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.1 | 3.3e-31 | 148 | 201 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhAas G h++DGCgEfmps geegt++a+kCaAC+CHRnFHR+e + PK24855.1 148 IRYRECLKNHAASSGRHVLDGCGEFMPS-GEEGTVDAMKCAACDCHRNFHRKEID 201 79*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.7E-30 | 148 | 200 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-21 | 148 | 201 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-29 | 149 | 200 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.03 | 150 | 199 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.47E-19 | 308 | 381 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.7E-31 | 316 | 383 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.2E-30 | 322 | 379 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
XDDEEELDYK EKGIMLNTIT TPTTTTTTNS SLDYNSPNSS SPVGSQKLLL THNNNNNISL 60 INPSSPHHQT LANFPNHNNN QYNISYRPKP NKPRNNIISK DHHHHQTDPD PINPYPVATS 120 GSNLNTTTVN ASASVSASAL AAVSSSPIRY RECLKNHAAS SGRHVLDGCG EFMPSGEEGT 180 VDAMKCAACD CHRNFHRKEI DGGGGGGGSE SRDRRKSLVI IPPAQHYHRH QSHHHHHPFT 240 LHGLSSPPPP QMTAGGAGFV PPVMMAFGGG GGGLAAESSS EDLNALQSNY VGGGMRGQHH 300 QHHHHQYYSG PGPGPGGVNS SKKRFRTKFS EEQKEKMMEF AEKLGWKIQK HDEEEVQVFC 360 SDVGVKRQVF KVWMHNNKQA MIKNKKQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-24 | 321 | 380 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889978.1 | 2e-82 | zinc-finger homeodomain protein 5 | ||||
Swissprot | Q9ZPW7 | 8e-69 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A2P5FXL0 | 3e-94 | A0A2P5FXL0_TREOI; Octamer-binding transcription factor | ||||
STRING | evm.model.supercontig_6.121 | 2e-78 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-58 | homeobox protein 24 |