PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK24732.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LSD
Protein Properties Length: 143aa    MW: 15335.1 Da    PI: 7.8264
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK24732.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.16e-135478125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               Cg+CrtlL YP+GA+ V C++C+tV
  PK24732.1 54 CGHCRTLLKYPPGAKQVLCSCCQTV 78
               ************************9 PP

2zf-LSD136.96e-1292115124
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                CggC +lL+YP+GAp V+C +C++
  PK24732.1  92 CGGCTVLLMYPYGAPKVKCCSCHH 115
                ***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.2E-165181IPR005735Zinc finger, LSD1-type
PfamPF069438.3E-105478IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.5E-989117IPR005735Zinc finger, LSD1-type
PfamPF069433.1E-992115IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
PPPPPPLPLQ PAPEQPPPPP PPPPGPPPPC LPPETPPPPM PIKMTSLEIA QMVCGHCRTL  60
LKYPPGAKQV LCSCCQTVNF VLEAHQVGQV KCGGCTVLLM YPYGAPKVKC CSCHHLTEIG  120
AHNERPPWSV QQGQPFPGPN HCY
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108198.16e-49protein LOL2
SwissprotO654264e-38LOL2_ARATH; Protein LOL2
TrEMBLA0A2P5CBQ82e-51A0A2P5CBQ8_PARAD; Zinc finger, LSD1-type
STRINGXP_010108198.12e-48(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.18e-38lsd one like 2