PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK24695.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 250aa MW: 28450.5 Da PI: 8.6026 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 174.3 | 5.8e-54 | 85 | 229 | 7 | 154 |
DUF702 7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslP 106 +C dCGn+akk+C ++RCRtCC++r+f C+thv+stWvp+a rr+r+++ ++ss++ + + ++skr+ +++++++s+t ++ +++ + ++slP PK24695.1 85 ACSDCGNRAKKECRFKRCRTCCRARAFPCSTHVRSTWVPVACRRKRRRHDPSSSSSSIS--SFSHSKRPTLYDCHTTTSISNTLTTFTNQD-ATLKQSLP 181 7*********************************************9999888776665..667778888877888888888877777666.555667** PP DUF702 107 eevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++v+++a+frc rv++++dge e+aYq av i GhvfkG+LydqG++e PK24695.1 182 SKVHAPAIFRCHRVTAISDGEVEVAYQVAVRICGHVFKGFLYDQGVDE 229 **********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-48 | 85 | 228 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.3E-21 | 86 | 126 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-23 | 180 | 227 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
XLLHLLLEFS FFRFKFGKNK EKEKEEHMNQ QQQPIYYSSS NHLLEPCSSN DAVFTYWKWR 60 DQTEAEAEAE AEEGVTPPIL NCWRACSDCG NRAKKECRFK RCRTCCRARA FPCSTHVRST 120 WVPVACRRKR RRHDPSSSSS SISSFSHSKR PTLYDCHTTT SISNTLTTFT NQDATLKQSL 180 PSKVHAPAIF RCHRVTAISD GEVEVAYQVA VRICGHVFKG FLYDQGVDEK NGDYSTSSSP 240 IVALSTPNPX |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 127 | 131 | RKRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876225.1 | 1e-51 | protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 | ||||
Swissprot | Q94CK9 | 3e-37 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A2P5BWY9 | 3e-67 | A0A2P5BWY9_PARAD; Uncharacterized protein | ||||
STRING | MLOC_14639.1 | 1e-47 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12330.2 | 1e-32 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
---|---|---|---|
|