PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK24486.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 362aa MW: 41536.8 Da PI: 5.624

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK24486.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	280.3	5.6e-86	2	354	22	374
GRAS 22 alLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalkl.fsevsPilkfshltaNqaIleavegeervHiiDfd 118 +lL++ + l+s +g+p++R++ yf +AL+ar+ + + +++ +l + ++ ++++ +l+a++ +e P+ +++ ++ qaI e v +++++HiiD++ PK24486.1 2 KLLNQCEMLCSVSGNPIERVVYYFCRALRARIDKeTERHMVLSLqTFQQFNPDKAMMSLNATHHaMHEEIPFSQLCIFAGIQAIIENVIEAKKIHIIDLG 101 6899999*************************5555666666355666666655555555445******************************* PP GRAS 119 isqGlQWpaLlqaLasRp.egpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld 215 i G QW L+qaLas + e+pp lRiT +g +sk+ +eetgerL +fA+++++p++f+++++++++ l+ + ++++++E++aV +++ l ++l+ PK24486.1 102 IRSGSQWTVLMQALASSNhESPPleLLRITSIGT---TSKDLIEETGERLLSFAKTINIPLSFKIVMVSDMSHLKEDLFELESDETVAVYSSYLLRSFLS 198 ***********887566667789***...68********************************************************9 PP GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 e+ +les ++k+v++l+P v+v++e e +hns+ F++rf+eal +y ++fd++e+ + r++ +r+ E+ + ++i+n+va+eg+er+ r + W PK24486.1 199 EPDQLES----LVKVVRNLNPCVMVLIEMEGNHNSPVFVNRFVEALFFYGTMFDCFETCMERNDPNRMLFEATYCFEAIRNIVATEGEERKIRIVKIDVW 294 9999999....************************************************************************************* PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ + ++G+++++ls + qa+l+ +++ + ++e + ++l++gWk+ p+ s+S+Wr PK24486.1 295 RAFFARFGMEELELSPSSIYQANLIADRFPsGTHCNLEINGKCLMMGWKGTPVQSLSVWR 354 **************************87889999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.813	1	333	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-83	2	354	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
XKLLNQCEML CSVSGNPIER VVYYFCRALR ARIDKETERH MVLSLQTFQQ FNPDKAMMSL 60 NATHHAMHEE IPFSQLCIFA GIQAIIENVI EAKKIHIIDL GIRSGSQWTV LMQALASSNH 120 ESPPLELLRI TSIGTTSKDL IEETGERLLS FAKTINIPLS FKIVMVSDMS HLKEDLFELE 180 SDETVAVYSS YLLRSFLSEP DQLESLVKVV RNLNPCVMVL IEMEGNHNSP VFVNRFVEAL 240 FFYGTMFDCF ETCMERNDPN RMLFEATYCF EAIRNIVATE GEERKIRIVK IDVWRAFFAR 300 FGMEELELSP SSIYQANLIA DRFPSGTHCN LEINGKCLMM GWKGTPVQSL SVWRFHRCNN 360 IN

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

XKLLNQCEML CSVSGNPIER VVYYFCRALR ARIDKETERH MVLSLQTFQQ FNPDKAMMSL  60
NATHHAMHEE IPFSQLCIFA GIQAIIENVI EAKKIHIIDL GIRSGSQWTV LMQALASSNH  120
ESPPLELLRI TSIGTTSKDL IEETGERLLS FAKTINIPLS FKIVMVSDMS HLKEDLFELE  180
SDETVAVYSS YLLRSFLSEP DQLESLVKVV RNLNPCVMVL IEMEGNHNSP VFVNRFVEAL  240
FFYGTMFDCF ETCMERNDPN RMLFEATYCF EAIRNIVATE GEERKIRIVK IDVWRAFFAR  300
FGMEELELSP SSIYQANLIA DRFPSGTHCN LEINGKCLMM GWKGTPVQSL SVWRFHRCNN  360
IN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-39	14	354	36	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022283.1	1e-170	DELLA protein RGL1
TrEMBL	A0A2P5CVA3	0.0	A0A2P5CVA3_PARAD; GRAS transcription factor
STRING	XP_010097794.1	1e-169	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-53	RGA-like 1