PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK24307.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 435aa    MW: 49582.7 Da    PI: 6.3073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK24307.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011174197123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y+C+ Cg+ ++++ +Lk+H +  H
  PK24307.1 174 YVCNVCGRKCKTNLDLKKHFKQlH 197
                9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.2E-692162IPR029060PIN domain-like
PROSITE profilePS5015710.99174202IPR007087Zinc finger, C2H2
SMARTSM003550.0048174197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176197IPR007087Zinc finger, C2H2
CDDcd061672.97E-12186328No hitNo description
Gene3DG3DSA:3.40.50.10101.2E-6259327IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
STLMISSTIG VQTPESRDXM NTVCICNAST SAFPTLPLLP SLFFRPHTDH LQSLKSNFSF  60
RPISFKWPII TACASASEID MFKTKQGVYA PKKKKVVILW DLDNKPPRGP PYEAAMALKQ  120
VAQHFGEVVD ASAYANRHAF IHLPQWVMEQ RRERKHLDIL ERKGLVKPPD TDTYVCNVCG  180
RKCKTNLDLK KHFKQLHERE RQKKLNRMRS LKGKKRQRFK ERFIAGNHKY NEAARSLLTP  240
KVGYGLASEL RRAGIFVKTV EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLR  300
KARDANLGTV VVGDWDRALG RHADVWVPWT GVENGEISEK NLVPRSRRSS ELFDTDDNGL  360
FSAGDFDQDL EIDSRLDKVV DELVVSSSEF NGVRISAFSE GEEENDDWIA EETGEDYMLG  420
DTDDDEDSED EDGIF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357383.20.0uncharacterized protein LOC103421127
TrEMBLA0A2P5CVL40.0A0A2P5CVL4_PARAD; Zinc finger, C2H2 domain containing protein
STRINGXP_008357383.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-168C2H2-like zinc finger protein