PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK24307.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 435aa MW: 49582.7 Da PI: 6.3073 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 174 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H PK24307.1 174 YVCNVCGRKCKTNLDLKKHFKQlH 197 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 1.2E-6 | 92 | 162 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.99 | 174 | 202 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0048 | 174 | 197 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 176 | 197 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 2.97E-12 | 186 | 328 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 1.2E-6 | 259 | 327 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 435 aa Download sequence Send to blast |
STLMISSTIG VQTPESRDXM NTVCICNAST SAFPTLPLLP SLFFRPHTDH LQSLKSNFSF 60 RPISFKWPII TACASASEID MFKTKQGVYA PKKKKVVILW DLDNKPPRGP PYEAAMALKQ 120 VAQHFGEVVD ASAYANRHAF IHLPQWVMEQ RRERKHLDIL ERKGLVKPPD TDTYVCNVCG 180 RKCKTNLDLK KHFKQLHERE RQKKLNRMRS LKGKKRQRFK ERFIAGNHKY NEAARSLLTP 240 KVGYGLASEL RRAGIFVKTV EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLR 300 KARDANLGTV VVGDWDRALG RHADVWVPWT GVENGEISEK NLVPRSRRSS ELFDTDDNGL 360 FSAGDFDQDL EIDSRLDKVV DELVVSSSEF NGVRISAFSE GEEENDDWIA EETGEDYMLG 420 DTDDDEDSED EDGIF |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008357383.2 | 0.0 | uncharacterized protein LOC103421127 | ||||
TrEMBL | A0A2P5CVL4 | 0.0 | A0A2P5CVL4_PARAD; Zinc finger, C2H2 domain containing protein | ||||
STRING | XP_008357383.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6441 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-168 | C2H2-like zinc finger protein |