PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK24122.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 703aa    MW: 77703 Da    PI: 6.264
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK24122.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.41.9e-2882166187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+ aL+++r+em+ ++r+++ k+plW++vs+k++e g++rs+k+Ckek+en+ k++k++k+g+ +++  + +t+++fdqlea
  PK24122.1  82 RWPRQETIALLKIRSEMDVAFRDASVKGPLWDDVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGKS--DGKTYRFFDQLEA 166
                8********************************************************************964..5557*******85 PP
2trihelix109.62e-34517602187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k evlaLi++r++++++++++  k+plWee+s++m++ g++r+pk+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  PK24122.1 517 RWPKTEVLALIQLRTNLDSKYQENGPKGPLWEEISSAMKKLGYNRNPKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 602
                8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.06275139IPR017877Myb-like domain
SMARTSM007179.7E-479141IPR001005SANT/Myb domain
CDDcd122031.63E-2281146No hitNo description
PfamPF138371.8E-1881167No hitNo description
PROSITE profilePS500907.364510574IPR017877Myb-like domain
SMARTSM007170.0028514576IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-4515573IPR009057Homeodomain-like
PfamPF138371.0E-23516603No hitNo description
CDDcd122035.00E-28517581No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MLGDHSSGTP TGLGSSSGGG GGGDAAAESR GGNSGHELVE DHHRIIMSGS NSKNHHQQQH  60
DDEILMSGGG GTDHRSSFGG NRWPRQETIA LLKIRSEMDV AFRDASVKGP LWDDVSRKLA  120
ELGYHRSAKK CKEKFENVYK YHKRTKDGRT GKSDGKTYRF FDQLEALDHH QLISSFSSSS  180
SSPPPPPPPQ PQLNIPKPHQ PAATASAIPP PPPSNNNSPI MAPLPQNITT SSTTTVPSIG  240
TTAMNISFQS PFVSANPTAT TSILPPPAPI ISSAAMNPPP PTATTTAAAT ATFMRNISAD  300
LVSNSMTSSS STSSDDNDHD QEMEDVEIGR SSRKRKRKWK DFFERLMKEV IQRQEDLQKK  360
FLEAIEKREQ ERMVREEAWR LQEMSRINRE REILAQERSF AAAKDAAVMS FLQKVSEQQQ  420
QNNNNDNPAA TTATTATVAA PILNNKVIQT AVQSTPPRPQ PQPQQQPPLQ QQPRPPQPLA  480
VSENVKKSTN ENNVIITNNS SMVVAAEGSG GGMSSSRWPK TEVLALIQLR TNLDSKYQEN  540
GPKGPLWEEI SSAMKKLGYN RNPKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL  600
DALYRMKNNK YYDSSASAAV ASANKAENSI PLMVQPEQQW PPAPLQPENN NNNNQINTRL  660
EDDDEDEEDE DMEEEEEDDE DEGGNNYELV ANKASTTTVN AVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337RKRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592114.10.0trihelix transcription factor GT-2
TrEMBLA0A067H7R90.0A0A067H7R9_CITSI; Uncharacterized protein
STRINGAES623650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-57Trihelix family protein