PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK23977.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 236aa MW: 25129.9 Da PI: 7.1915 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.3 | 1.1e-30 | 112 | 165 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl PK23977.1 112 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 165 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-20 | 109 | 169 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 109 | 168 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-31 | 111 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-24 | 113 | 165 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.7E-8 | 115 | 164 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MREDDSNWFN RWAEELPSPE ELMPLSQTLI TPDLALAFDI RNSNTAAAVV AAANNGGSPP 60 RAHTHQGPPP PPLSSSQLQP PSSTQPNSSE FGDSADLGSG AAGEEPARTL KRPRLVWTPQ 120 LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG LTRENVASHL QKYRLYLKRM QGLSGSGGGG 180 GAGGGGLAAS PDPATDHLFA SSPVPAHFLH PSRSNSDHFL PFVPVLHHQQ HMAVAX |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-33 | 112 | 168 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003521111.1 | 2e-98 | transcription factor MYBC1 | ||||
Refseq | XP_028225157.1 | 2e-98 | transcription factor MYBC1-like | ||||
Swissprot | O22210 | 1e-66 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A2P5D2N8 | 1e-97 | A0A2P5D2N8_PARAD; Octamer-binding transcription factor | ||||
STRING | GLYMA03G27890.2 | 2e-97 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10760.1 | 7e-66 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|