PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK23854.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | G2-like | ||||||||
Protein Properties | Length: 380aa MW: 43722.3 Da PI: 7.5866 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.1 | 8.1e-33 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ PK23854.1 19 PRLRWTPELHHCFVHAIERLGGHKKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 15 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.731 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-15 | 17 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-23 | 19 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.0E-9 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MSSCGRSGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG HKKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRGDLVKQ DRTSSNHFQR SRQNFNEEYE HNRRIIIDHH DENDVVDDDD 120 EDEDNQYEFE YDDDEDDQLI NNNVGFLNSS SKRIRESDSN HSIYTSLPSK RARSSSRVQC 180 NRERIISSTS NERVRNPYYF DDYNSKLLGL GLGCHDHHHQ PQPHQPQQQL FKGIIKETHS 240 SPPFSLPHSL YNLNPFKYAV QESDFFKANK LVDRSYEPKR PCKEEKTTMT TALQVDRDPE 300 ARGFGLSLSL PLHHHHHHLS SNKSNASSMS EISEAITSSY NTTTTTNNNN TMSAYKDCSS 360 SSSAKHNRLN LDLSIALCGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 20 | 74 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093351.1 | 1e-102 | uncharacterized protein LOC21405703 | ||||
Refseq | XP_024019425.1 | 1e-102 | uncharacterized protein LOC21405703 | ||||
TrEMBL | W9R1B9 | 1e-101 | W9R1B9_9ROSA; Putative Myb family transcription factor | ||||
STRING | XP_010093351.1 | 1e-102 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5539 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 3e-33 | G2-like family protein |