PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23633.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 290aa    MW: 32074.5 Da    PI: 8.3328
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23633.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038223245223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp Cg  Fs+  +L+ H  + H
  PK23633.1 223 VCPQCGAKFSSVTTLVDHVEKvH 245
                6*****************99888 PP
2zf-C2H215.83.9e-05263284323
                ETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                Cp+C+k F+++  L+ H  + H
  PK23633.1 263 CPKCSKGFRDPVALVEHVEReH 284
                *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.31E-12458No hitNo description
PROSITE profilePS510397.5841056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.2E-101153IPR000058Zinc finger, AN1-type
PfamPF014281.7E-131351IPR000058Zinc finger, AN1-type
SMARTSM001548.6E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.0E-1091147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.71E-893145No hitNo description
PROSITE profilePS510397.72898145IPR000058Zinc finger, AN1-type
PfamPF014281.8E-7101141IPR000058Zinc finger, AN1-type
SMARTSM001540.081101142IPR000058Zinc finger, AN1-type
SMARTSM003550.042222245IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058222245IPR007087Zinc finger, C2H2
PfamPF138946.1E-4224245No hitNo description
PROSITE patternPS000280224245IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-4226245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.6261284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912261289IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDECKQ IDFLPFTCDR CRLVFCLEHR SYIKHHCPKA DRNDVTVVIC  60
PLCAKGVRLN PDEDANITWE THVNTDCDPS NYERVTKKKI CPVPRCKEIL TFSNTLKCRD  120
CLVDHCLKHR FGADHKCPGP KKPESSFGFM SLLNRSKKEE QKPGRAPATS SSKWASSFLN  180
AASSVRASAE ASVTKLSNEI SQKWQIAKDG VGQTSNSNDQ MEVCPQCGAK FSSVTTLVDH  240
VEKVHEKGGG NRLGGKKVTI DACPKCSKGF RDPVALVEHV EREHGGTSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102532.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-130SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A2P5A7G70.0A0A2P5A7G7_PARAD; Zinc finger transcription factor
STRINGXP_010102532.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-128C2H2 family protein