PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK23555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24470.8 Da PI: 8.9537 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.4e-13 | 28 | 80 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ ++ Lr+llP+ + + kKls +++ ++ +Y+ +Lq PK23555.1 28 KKLNHNASERDRRKKVNHMYSALRSLLPPsD---HTKKLSIPATVSRVLKYVPELQ 80 6789*************************44...6666**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.15E-12 | 26 | 84 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-15 | 27 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.916 | 27 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-11 | 28 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-12 | 28 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.6E-11 | 33 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
NGSKLIAPLR HPHPRPPPXN SDLTMVEKKL NHNASERDRR KKVNHMYSAL RSLLPPSDHT 60 KKLSIPATVS RVLKYVPELQ EEVESLVLKK EELLSKMNSM QQGKTITATT TANQEIKKVK 120 SIGPNSLSSI SATQLSEKEI AVQILSYKAD NDLLSEMLHN YEIEGLSLLH ASSFESIGGR 180 LFHNLHLQAE VSYCMESGTT IDANLLSLHD NKEKLLVVQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024922954.1 | 1e-64 | transcription factor ORG2-like isoform X1 | ||||
TrEMBL | A0A2P5ETM5 | 6e-78 | A0A2P5ETM5_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010108530.1 | 3e-62 | (Morus notabilis) | ||||
STRING | XP_010108531.1 | 4e-62 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-33 | bHLH family protein |