PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23387.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 256aa    MW: 28444.1 Da    PI: 8.2277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23387.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-1382128354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  PK23387.1  82 KNHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVQRVKEL 128
                58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.66379128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-1182128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-1282131No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1483137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-1583144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1285134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.9E-4171235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQPENPDLYQ FLADNGLINV VSPYNFPAPG GGSGEHHNNH QFSSMQSFCS SSSYYPYSKG  60
STGTCSDSNT TSPHDRALVA LKNHKEAEKR RRERINSHLD KLRSLLPCNS KTDKASLLAK  120
VVQRVKELKE QTSELTELES FPSETDEITV LSSGNYSGTA GGEGQLIFKA SLCCEDRSDL  180
IPDLIEILKS LHLKTLKVEM ATLGGRIRNV LIVAADKEHS IESVHFLQNA LKSLLERSNS  240
SERSKRRRGL ERKIVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112839.11e-145transcription factor bHLH106
SwissprotO806743e-81BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2P5B9A81e-155A0A2P5B9A8_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010112839.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]