PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK23301.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 520aa MW: 57139.6 Da PI: 6.1501 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.9 | 9.3e-07 | 265 | 286 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H PK23301.1 265 FCAICGKGFKRDANLRMHMRGH 286 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.46E-5 | 262 | 289 | No hit | No description |
SMART | SM00355 | 0.012 | 264 | 286 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.884 | 264 | 291 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.3E-6 | 265 | 315 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 266 | 286 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 313 | 346 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 25 | 351 | 373 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MELREGLCAG QWPNSSSKEL SSDPPSSYSE FNSHQGQQKW PNSSILDYGV RIEPSFRGFD 60 QSSEVHAVIP LDLSNKSKVL GPEDVHMQDT EEANNIPDWD PSAMLNNLSF LEQKIHQLQN 120 LVQLIAGGGG QVLGRPTEVA QQHQLITADL TSIIAQLIST AGSLLPSAQN TFTTDLPSMG 180 QLAQPGEVLG VSAGVQPQNN GRSKISEESN QIDKNANHGV EHNNHMDEHD FKDEEDADDG 240 ENLPPGTYEI LQLEKEEILA PHTHFCAICG KGFKRDANLR MHMRGHGDEY KTPAALAKPH 300 KELGSEPVVI KRYSCPYAGC KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS YTCSRCNIKK 360 FSVIADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPID ETRGNGGGPA 420 DHSTGIEVTN KGSVNSVTFN FGPSTPGETV VHNIMDEKGN LDDPTACFSP LNFDTCNFGG 480 FHEFPRPPFE DSESSFSFLL SGSCSYPPKI GAESSSNNNL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094863.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2P5FR06 | 0.0 | A0A2P5FR06_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_010094863.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-172 | C2H2 family protein |