PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK23183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 106aa MW: 12072.9 Da PI: 8.0378 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 126.7 | 2.7e-39 | 1 | 105 | 270 | 374 |
GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 sl+a++p+es +r+kvE+ ++++ei+n+va eg er+erhe+l kWr+ +e GFk v+ls +a++q k ll ++ +gyr+ e++g+l+lgW+drpL++ PK23183.1 1 SLDATFPAESPQRAKVEQYIFAPEIRNIVAYEGPERIERHERLDKWRKLMEGKGFKGVQLSANAVTQSKILLGLYSCEGYRLTEDNGCLLLGWMDRPLIA 100 799************************************************************************************************* PP GRAS 370 vSaWr 374 +SaWr PK23183.1 101 ASAWR 105 ****8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 9.3E-37 | 1 | 105 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 16.408 | 1 | 85 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 106 aa Download sequence Send to blast |
SLDATFPAES PQRAKVEQYI FAPEIRNIVA YEGPERIERH ERLDKWRKLM EGKGFKGVQL 60 SANAVTQSKI LLGLYSCEGY RLTEDNGCLL LGWMDRPLIA ASAWRC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-25 | 1 | 104 | 276 | 378 | Protein SCARECROW |
5b3h_A | 2e-25 | 1 | 104 | 275 | 377 | Protein SCARECROW |
5b3h_D | 2e-25 | 1 | 104 | 275 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549053.1 | 2e-62 | DELLA protein RGL1 | ||||
Refseq | XP_028206779.1 | 2e-62 | DELLA protein RGL1-like | ||||
Swissprot | G7L166 | 9e-59 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A2P5CJP5 | 2e-64 | A0A2P5CJP5_PARAD; GRAS transcription factor | ||||
STRING | GLYMA16G05751.1 | 8e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9470 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50420.1 | 3e-27 | scarecrow-like 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|