PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK23067.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 268aa MW: 29988.7 Da PI: 10.3851

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK23067.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PK23067.1 87 FICEVCNKGFQREQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	14.5	0.00011	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PK23067.1 164 WKCEKCSKRYAVQSDWKAHSKTC 186 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.42E-8	86	109	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-6	86	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.99	87	109	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	87	109	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	1.1E-5	87	109	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	129	159	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.0E-6	152	185	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.42E-8	159	184	No hit	No description
SMART	SM00355	130	164	184	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MAAASSSSIP GFGINSNREE DPNNNQMMMK QHSSSTPTNS SSLPLQQPNP PPPIPAQKKK 60 RNQPGTPNPD AEVIALSPKT LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNN 120 KDPPKRKVFL CPEPTCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KRYAVQSDWK 180 AHSKTCGTRE YRCECGTLFS RRDSLITHRA FCDALAQETA RHPTSLNTIG GHQLYGNSHV 240 NLGLSQMGSQ FSSLQNHPST NNXVKVGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	160	227	3	70	Zinc finger protein JACKDAW
5b3h_F	3e-35	160	227	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894322.1	1e-143	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-115	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2P5BUI1	1e-141	A0A2P5BUI1_TREOI; TFIIH C1-like domain containing protein
STRING	EOY01204	1e-139	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-117	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]