PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK22680.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 508aa MW: 54576.7 Da PI: 6.8415

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK22680.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.5e-06	398	436	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L PK22680.1 398 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 436 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.09	387	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-11	397	452	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.07E-7	397	441	No hit	No description
SMART	SM00353	0.0037	398	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-9	401	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
GSFGNWSSTT SSTDMVDIKS RSSLDSGTAS SMIFHDTLKL QQAQDSSSPA GASAGGTGDH 60 NLQMMMGLGL SSQAMDWNQA ALFRGENKAA SEGSSFRSIL LEENGGSGNN FQQEITSSSS 120 GGGQLQWSRQ DPKLLLFPGD STSNDTTFKQ MNRAITTPGF SLDHHHHPHH HEFSPQYSSG 180 DGSTVTCQGG GGGLANNNNN HNSSYQVDSA ALYGSPSAIL LQGLFGPDNN LTSSSNMPFN 240 SNNSPPNYGV MVSNTATTAT ASNNEVLAPM NSSNWSSNST NNKLPQFLRA SSPKQQHSPT 300 PAANYSHLQF SNNGPFWSAP PEAAPATIKD VRSNFFSTLA TQPQFPTTTF DEKPKNISDV 360 RDHHQSGGVV AKKSGNEAAS NKRARNDQTQ SPLPAFKVRK EKMGDRITAL QQLVSPFGKT 420 DTASVLSEAI EYIKFLHEQV SVLSNPYMKS GAAIQQQQNN SEKSKDTEDI KQDLRSRGLC 480 LVPVSSTFPM THETAVDFWT PTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

GSFGNWSSTT SSTDMVDIKS RSSLDSGTAS SMIFHDTLKL QQAQDSSSPA GASAGGTGDH  60
NLQMMMGLGL SSQAMDWNQA ALFRGENKAA SEGSSFRSIL LEENGGSGNN FQQEITSSSS  120
GGGQLQWSRQ DPKLLLFPGD STSNDTTFKQ MNRAITTPGF SLDHHHHPHH HEFSPQYSSG  180
DGSTVTCQGG GGGLANNNNN HNSSYQVDSA ALYGSPSAIL LQGLFGPDNN LTSSSNMPFN  240
SNNSPPNYGV MVSNTATTAT ASNNEVLAPM NSSNWSSNST NNKLPQFLRA SSPKQQHSPT  300
PAANYSHLQF SNNGPFWSAP PEAAPATIKD VRSNFFSTLA TQPQFPTTTF DEKPKNISDV  360
RDHHQSGGVV AKKSGNEAAS NKRARNDQTQ SPLPAFKVRK EKMGDRITAL QQLVSPFGKT  420
DTASVLSEAI EYIKFLHEQV SVLSNPYMKS GAAIQQQQNN SEKSKDTEDI KQDLRSRGLC  480
LVPVSSTFPM THETAVDFWT PTFGGTFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010112076.1	1e-168	transcription factor bHLH123
TrEMBL	A0A2P5D2X5	0.0	A0A2P5D2X5_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRING	XP_010112076.1	1e-167	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-70	bHLH family protein