PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK22647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB | ||||||||
Protein Properties | Length: 173aa MW: 20079 Da PI: 9.9971 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++ +G g+W+++++ g+ R++k+c++rw +yl PK22647.1 14 KGLWSPEEDEKLFNYITHFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.6e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ PK22647.1 67 RGMFSQQEEDLIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNSC 111 788*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.484 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.05E-10 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.333 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-9 | 70 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT HFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLVKQG 120 IDPTTHKPLS NENNNNNNTM ELAKDKKNGT TTTTRDQKES LMIIPQFHDH HHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024169289.1 | 2e-96 | transcription factor MYB86-like | ||||
Swissprot | Q8LPH6 | 1e-80 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A2P5FFY6 | 1e-101 | A0A2P5FFY6_TREOI; MYB transcription factor | ||||
STRING | XP_008239319.1 | 4e-92 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5831 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 7e-83 | myb domain protein 86 |