PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK22475.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 158aa MW: 16983.6 Da PI: 9.8988 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.7 | 4.7e-16 | 40 | 127 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk +k+ +++ + s++p++d+l+ PK22475.2 40 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVsgrdDYTKAAKTDIQCKNRIDTVKKKYKLEKAKLSSG--GGPSKWPFYDRLD 127 7*************************************97666666778999*********************97..67778******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.4E-27 | 38 | 129 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
XAAPPQQPVT QNALTLALPI QTRNGVGERG SGGGGGREDC WSEGATSVLI DAWGERYLEL 60 SRGNLKQKHW KEVADIVSGR DDYTKAAKTD IQCKNRIDTV KKKYKLEKAK LSSGGGPSKW 120 PFYDRLDHLI GPTVKIAGAV GGHNAVSLAN SSSQHAHX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026698.1 | 4e-63 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_024026700.1 | 4e-63 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 4e-58 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2P5B8L0 | 4e-68 | A0A2P5B8L0_PARAD; Trihelix transcription factor | ||||
TrEMBL | A0A2R6QFA1 | 3e-68 | A0A2R6QFA1_ACTCH; Trihelix transcription factor | ||||
STRING | VIT_09s0002g00720.t01 | 8e-61 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7919 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 5e-47 | sequence-specific DNA binding transcription factors |