PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22475.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 374aa    MW: 40766.4 Da    PI: 10.3866
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22475.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.13.1e-1563150186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k+  +++  +  s++p++d+l+
  PK22475.1  63 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVsgrdDYTKAAKTDIQCKNRIDTVKKKYKLEKAKLSSG--GGPSKWPFYDRLD 150
                7*************************************97666666778999*********************97..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-2661152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEEEDEIQSH QSPGSASPAS PRPVGRITVT VAAAPPXTLA LPIQTRNGVG ERGSGGGGGR  60
EDCWSEGATS VLIDAWGERY LELSRGNLKQ KHWKEVADIV SGRDDYTKAA KTDIQCKNRI  120
DTVKKKYKLE KAKLSSGGGP SKWPFYDRLD HLIGPTVKIA GAVGGHNAVS LANSSSQHAH  180
KVPLGIPVRG VSPFQGLRDP KPHHLQQSLK NQKMQHKKRG PVDSSSSREA SPASTDSFPM  240
DFYERKRVRT GREMNLNANL NPGRSGGGGG GGAFRGGKEK KGWGNAVKEL TQAILKFGEA  300
YEQAESSKLQ QVVEMEKQRM NFAKELELQR MQFFMKTQLE ISQLKHGRKG GIGNASNHHH  360
SNNNNNNNNS DSSN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026698.11e-160trihelix transcription factor ASIL2
RefseqXP_024026700.11e-160trihelix transcription factor ASIL2
SwissprotQ9LJG84e-96ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2P5B8L00.0A0A2P5B8L0_PARAD; Trihelix transcription factor
STRINGXP_010104605.11e-148(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-57sequence-specific DNA binding transcription factors