PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22348.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 276aa    MW: 31759.2 Da    PI: 9.9077
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22348.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.3e-20182274299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                fk  ++++++++ +l+lp +f+++h g+k++  +++     +r+W+vkl   k++ ++++tkGW  F +an L++gD +vF+++ r+ ++l+v++++k
  PK22348.1 182 FKRIIRANNNRQYNLRLPDSFVTNHVGSKTQ--MVS-LKVGSRKWDVKL--LKCKASFFFTKGWAAFLEANSLNTGDACVFEFQPREPTSLKVSIIKK 274
                46777888999999***********877666..344.44588*******..9*******************************98899999**99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.586496IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-12598IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-13696IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.065696IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-21174273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-19177272IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.001181275IPR003340B3 DNA binding domain
CDDcd100173.42E-16182273No hitNo description
SMARTSM010191.5E-11182275IPR003340B3 DNA binding domain
PfamPF023622.0E-17182274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVSLKFVKII KNEHSKIQLA LPQKFGMLFG DSLASSVSLV LPCGHTWKIG LIKQNDNIIL  60
QKDWQKFIQH YGINRQLLIF DYRGNSNFDV FITDDSSCEI DYTHFPFYSD EKKNGKSPVI  120
NLTSSEECSS NSDYKGKSIV SEESEDETTR KMKRRNEGAY NTYRDTKAYK QASQFYTNNP  180
SFKRIIRANN NRQYNLRLPD SFVTNHVGSK TQMVSLKVGS RKWDVKLLKC KASFFFTKGW  240
AAFLEANSLN TGDACVFEFQ PREPTSLKVS IIKKIM
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-18B3 family protein