PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK22311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 91aa MW: 10381.3 Da PI: 8.4985 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 54.2 | 2.8e-17 | 12 | 89 | 187 | 271 |
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 ++ ++++rv++gE+laV++ h l+d++++ ++ lv +l+P+++++veq++ s+sFl+rf+ +l+yys++fds+ PK22311.1 12 LNVGVSTFRVRRGETLAVHWLR--HCLYDSTGPDWR----TIGLVEELRPRIFTLVEQDIAQ-SGSFLDRFVGSLQYYSTMFDSI 89 5677899*************99..888888887777....*******************998.899******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.58 | 1 | 91 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.7E-15 | 12 | 89 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
XPVVRNPKTG LLNVGVSTFR VRRGETLAVH WLRHCLYDST GPDWRTIGLV EELRPRIFTL 60 VEQDIAQSGS FLDRFVGSLQ YYSTMFDSIG X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 7e-23 | 13 | 90 | 200 | 277 | Protein SCARECROW |
5b3h_D | 7e-23 | 13 | 90 | 200 | 277 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor involved in asymmetric cell division. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021814842.1 | 3e-35 | protein SCARECROW-like | ||||
Swissprot | Q9AVK4 | 1e-22 | SCR_PEA; Protein SCARECROW | ||||
TrEMBL | A0A2P5CNN8 | 2e-49 | A0A2P5CNN8_PARAD; GRAS transcription factor | ||||
STRING | EMJ01978 | 4e-34 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 3e-24 | GRAS family protein |