PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK22310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 191aa MW: 21449.1 Da PI: 6.5112 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 182.5 | 3.1e-56 | 2 | 179 | 189 | 374 |
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 l++e+L+v+++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++ +eseer++vE++ PK22310.1 2 LDPERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYDEESEERHVVEQQ 94 899****************9..999999999999....**********************.899************************************ PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ll+rei+nv+a g + r r ++++Wre+l+++GF+ ++l +aa+qa lll +++sdgy++ e++g+l lgWkd L+++SaWr PK22310.1 95 LLSREIRNVLAVGGPS-RSRDVKFHNWREKLQQSGFRGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 179 ***************9.667778**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.183 | 1 | 159 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-53 | 2 | 179 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
NLDPERLNVS KREAVAVHWL QHSLYDVTGS DTNTLWLLQR LAPKVVTVVE QDLSHAGSFL 60 GRFVEAIHYY SALFDSLGAS YDEESEERHV VEQQLLSREI RNVLAVGGPS RSRDVKFHNW 120 REKLQQSGFR GISLAGNAAT QATLLLGMFP SDGYTLVEDN GTLKLGWKDL CLLTASAWRP 180 PYHATPTTLH Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-116 | 1 | 180 | 201 | 380 | Protein SCARECROW |
5b3h_A | 1e-116 | 1 | 180 | 200 | 379 | Protein SCARECROW |
5b3h_D | 1e-116 | 1 | 180 | 200 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor involved in asymmetric cell division. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010113028.1 | 1e-126 | protein SCARECROW | ||||
Swissprot | Q9AVK4 | 1e-119 | SCR_PEA; Protein SCARECROW | ||||
TrEMBL | W9SCD5 | 1e-124 | W9SCD5_9ROSA; Uncharacterized protein | ||||
STRING | XP_010113028.1 | 1e-125 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2068 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-115 | GRAS family protein |