PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22222.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 358aa    MW: 39510.6 Da    PI: 4.4733
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22222.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.2e-16209245135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  PK22222.1 209 CQHCGVSEhnTPAMRRGPAGPRTLCNACGLMWANKGT 245
                **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.2E-767102IPR010399Tify domain
PROSITE profilePS5132012.94267102IPR010399Tify domain
PfamPF062003.6E-1070101IPR010399Tify domain
PfamPF062032.1E-14137178IPR010402CCT domain
PROSITE profilePS5101712.63137179IPR010402CCT domain
PROSITE profilePS501148.655203264IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-9203256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-14207250IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.05E-10207252No hitNo description
CDDcd002026.03E-16208252No hitNo description
PfamPF003205.7E-14209245IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFEDHMRG PIPVDEDDDE DEYEDGRSND IDDAMDDLEE THMNSVNVVA  60
SHGGVVMASR TSELTLSFEG EVYVFPAVTP EKVQAVLLLL GGRDVPTGIP TVEVPYNQNN  120
WGVAVVDAPK RSNLSRRIAS LVRFREKRKE RCFEKKIRYT VRKEVAQRMH RKNGQFASLK  180
ENSGTSGWDS SQTGPQDGTI RPETVLRRCQ HCGVSEHNTP AMRRGPAGPR TLCNACGLMW  240
ANKGTLRDLS KGGRNLCTDL VESETLLDVK PLVVEGEFSG NQDEHGTSAE DPSKIVTEGY  300
NDRSVNPAEE DLHGATEDFA NTLPIGIMHS SVNDDDQEPL DELPNPSDTD IDIPTNFD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023415.10.0GATA transcription factor 24
SwissprotQ8GXL77e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2P5EWB00.0A0A2P5EWB0_TREOI; GATA transcription factor
STRINGXP_010099556.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.19e-62ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]