PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21934.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 141aa    MW: 15267.1 Da    PI: 10.3963
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21934.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-192052133
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
               Cs C+tt TplWR+gp g+k+LCnaCG++yrkk
  PK21934.1 20 CSDCRTTRTPLWRSGPAGPKSLCNACGIRYRKK 52
               ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-131254No hitNo description
SMARTSM004011.0E-131464IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-151852IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402045IPR000679Zinc finger, GATA-type
CDDcd002027.21E-122052No hitNo description
PfamPF003201.8E-172052IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5712050IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MDVTEKESLA DQTNEYKKCC SDCRTTRTPL WRSGPAGPKS LCNACGIRYR KKMASMLGLK  60
KGTERKKERS HSTNNQPSSS SGGTTITTIT TTTSSVSNTT NNNVNGDQND KGMTQTTLKV  120
RLIALGKEVL THRLSSSSSS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094010.12e-33GATA transcription factor 16
TrEMBLW9QV334e-32W9QV33_9ROSA; GATA transcription factor 16
STRINGXP_010094010.17e-33(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.17e-19GATA transcription factor 17