PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21769.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 160aa    MW: 18411 Da    PI: 9.7437
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21769.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs +gklye++s
  PK21769.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSARGKLYEFCS 59
               79***********************************************96 PP
2K-box82.59.3e-2880158785
      K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                 +l+ +++es +qe+ kLk+++e L+r+qR+llGedLe L lke+qqLeq+L++slk+iRs+K+++++++++ l+ ke+
  PK21769.1  80 GKLAGNDTESIYQEYLKLKAKVEVLRRTQRNLLGEDLEHLGLKEIQQLEQKLDSSLKQIRSTKTQHMIDELSLLRGKEE 158
                3478899**********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.969161IPR002100Transcription factor, MADS-box
CDDcd002655.11E-42278No hitNo description
SuperFamilySSF554552.22E-32275IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014864.8E-2385158IPR002487Transcription factor, K-box
PROSITE profilePS5129712.97987160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSA RGKLYEFCSG  60
PSITKTLERY DRCSYGAQEG KLAGNDTESI YQEYLKLKAK VEVLRRTQRN LLGEDLEHLG  120
LKEIQQLEQK LDSSLKQIRS TKTQHMIDEL SLLRGKEETX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-2075157187Developmental protein SEPALLATA 3
4ox0_B2e-2075157187Developmental protein SEPALLATA 3
4ox0_C2e-2075157187Developmental protein SEPALLATA 3
4ox0_D2e-2075157187Developmental protein SEPALLATA 3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018306.12e-86truncated transcription factor CAULIFLOWER D isoform X2
SwissprotQ396853e-79CMB1_DIACA; MADS-box protein CMB1
TrEMBLA0A2P5E2H11e-96A0A2P5E2H1_PARAD; MADS-box transcription factor
STRINGVIT_01s0011g00110.t013e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.13e-73MIKC_MADS family protein