PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK21766.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 261aa MW: 30336.5 Da PI: 9.9865 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.5 | 8.9e-12 | 12 | 95 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 d + + lp kf++ g+ t+++ + + +W++ l k+g+ +l++GW eFvk +L g ++ F++ grs+f + ++++ PK21766.1 12 DDYSMTQWALPPKFVRLQGHT--LAETVSFVLPCSHKWKIGL--VSKDGKLYLKEGWPEFVKHYQLSYGYMLKFTYGGRSKF--NTSIYD 95 445555689******777754..6779***************..99999****************************99999..666665 PP | |||||||
2 | B3 | 56.3 | 5.6e-18 | 181 | 258 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 lp +f++++ ++k++++tl++ ++W+v+l ++s+++ + +GW++F an L++gD +vF++ +r+ ++l+v++fr+ PK21766.1 181 QLPEQFIRSYLEPKTQQVTLKV---GTKQWTVTL--LNCSSGFSFCAGWSKFLAANSLCTGDACVFEVLKRKPAKLRVTIFRN 258 69********888888766664...55*******..*******************************9999**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.461 | 4 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-15 | 5 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.58E-10 | 5 | 95 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-13 | 7 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.8E-5 | 7 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-9 | 11 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-20 | 158 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-18 | 159 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.633 | 165 | 259 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-10 | 166 | 259 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.31E-14 | 166 | 257 | No hit | No description |
Pfam | PF02362 | 1.9E-14 | 181 | 258 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
XMTSFCFFKI HDDYSMTQWA LPPKFVRLQG HTLAETVSFV LPCSHKWKIG LVSKDGKLYL 60 KEGWPEFVKH YQLSYGYMLK FTYGGRSKFN TSIYDTSTCE IDYTRFSSPN FTREKSDTEG 120 MSKKAKAENH TTKNWKQSRH VGAYNTYEGT KAYEEASRFP SKHPVFRRIL RTDKCHRYKQ 180 QLPEQFIRSY LEPKTQQVTL KVGTKQWTVT LLNCSSGFSF CAGWSKFLAA NSLCTGDACV 240 FEVLKRKPAK LRVTIFRNDD V |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 6e-16 | B3 family protein |