PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21682.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 445aa MW: 48046.7 Da PI: 9.5214

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21682.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	212	234	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ ++H + H PK21682.1 212 TCHKCGEQFNKWEAAESHHLSkH 234 7*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	213	234	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.34E-21	236	444	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.3E-7	244	417	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MPTVWFSLKK SLHCKSEPSE VHDPKSRKHL STILTRKAGR SGCSRSIANL KDVIHGSKRH 60 MEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKISGFN GFQEGVGNGS IGNGSGGSSG 120 GSGGGGSTFV GTLRPGTPGP GGHSTMHYFN PSFKTSSTPP RKSQFLLSDK ENSTDGAAFG 180 GSAIFGGGNS NGVRQSNRIS LDADSNGSST ITCHKCGEQF NKWEAAESHH LSKHAVTELV 240 EGDSSRKIVE IICRTSWLKS ENHCGRIERV LKVHNMQKTL ARFEEHREMV KMKASKLAKK 300 HPRCLADGNE LLRFYGTTLA CSLGLSGSSS LCVSEKCSVC RIIRNGFSAK KELKEGVGVF 360 TTSTSGRAFE SIEIIEEDPS LRKALIVCRV IAGRVHKPLE NIQEITGQIG FDSLAGKVGL 420 YSNIEELYLL NPRALLPCFV VICKP

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MPTVWFSLKK SLHCKSEPSE VHDPKSRKHL STILTRKAGR SGCSRSIANL KDVIHGSKRH  60
MEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKISGFN GFQEGVGNGS IGNGSGGSSG  120
GSGGGGSTFV GTLRPGTPGP GGHSTMHYFN PSFKTSSTPP RKSQFLLSDK ENSTDGAAFG  180
GSAIFGGGNS NGVRQSNRIS LDADSNGSST ITCHKCGEQF NKWEAAESHH LSKHAVTELV  240
EGDSSRKIVE IICRTSWLKS ENHCGRIERV LKVHNMQKTL ARFEEHREMV KMKASKLAKK  300
HPRCLADGNE LLRFYGTTLA CSLGLSGSSS LCVSEKCSVC RIIRNGFSAK KELKEGVGVF  360
TTSTSGRAFE SIEIIEEDPS LRKALIVCRV IAGRVHKPLE NIQEITGQIG FDSLAGKVGL  420
YSNIEELYLL NPRALLPCFV VICKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015897979.1	0.0	uncharacterized protein LOC107431545
Refseq	XP_015897987.1	0.0	uncharacterized protein LOC107431545
TrEMBL	A0A2P5C4K1	0.0	A0A2P5C4K1_TREOI; Zinc finger, C2H2 domain containing protein
STRING	XP_010267823.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4983	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-158	C2H2 family protein