PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21310.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Trihelix

Protein Properties

Length: 80aa MW: 9331 Da PI: 4.4622

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21310.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.6	1.8e-19	9	78	2	70
trihelix 2 WtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+++ev Li++r++m++r+++g ++ lWe++++k++ g+ers +Ck+kwe++n + k ++++++ PK21310.1 9 WPESEVSRLIQFRTSMDSRFEQGGfPEEVLWEDIAAKLACLGYERSGLMCKDKWESINHYVKVSNNNNNN 78 *******************97637899****************************99998888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.596	1	66	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.4E-4	2	65	IPR009057	Homeodomain-like
Pfam	PF13837	2.7E-14	7	78	No hit	No description
CDD	cd12203	1.29E-22	7	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
XPNRDESTWP ESEVSRLIQF RTSMDSRFEQ GGFPEEVLWE DIAAKLACLG YERSGLMCKD 60 KWESINHYVK VSNNNNNNNE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089408.1	1e-27	trihelix transcription factor PTL
Swissprot	Q9LZS0	7e-14	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2P5AIL3	2e-33	A0A2P5AIL3_PARAD; GAMYB transcription factor
STRING	XP_010089408.1	4e-27	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21864	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-16	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]