PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21157.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 313aa MW: 35861.9 Da PI: 8.7919

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21157.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.9	7.6e-32	44	153	1	99
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..se 89 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + PK21157.1 44 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldnsstTEDSSKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGDesAK 143 89*************************99988445558889**********************************************543442456 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l++ ++r+ PK21157.1 144 ARLYIDWRRR 153 6677777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-40	37	155	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-30	40	136	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.00E-27	42	135	No hit	No description
PROSITE profile	PS50863	14.635	44	152	IPR003340	B3 DNA binding domain
SMART	SM01019	3.0E-25	44	154	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-29	44	153	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MADLSLRANY EENSNNSSTS GTHGVWSCSS SSGTDHHHQR EHMFDKVVTP SDVGKLNRLV 60 IPKQHAEKYF PLDNSSTTED SSKGLLLNFE DRNGKSWRFR YSYWNSSQSY VMTKGWSRFV 120 KEKKLDAGDI VSFERGVGDE SAKARLYIDW RRRPHHHHHH HHPLGHHQHQ QYHHHQYHHH 180 ALQQSTNPGS LITPLVQFST DNHHQYQWGG GVGGGISGRR GGEGPFYSLP SGISMSMPPL 240 HHENLRYNYN NSSIQYPYYN NNLHLHHQQH NNQYYHTSST AATGIINRPA SGIISDNNNN 300 NNNNNNHHHI DPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-64	40	155	4	115	B3 domain-containing transcription factor NGA1
5os9_B	1e-64	40	155	4	115	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888929.1	2e-70	B3 domain-containing protein Os03g0120900-like isoform X1
Refseq	XP_015888930.1	9e-71	B3 domain-containing protein Os03g0120900-like isoform X2
Refseq	XP_015888931.1	8e-71	B3 domain-containing protein Os03g0120900-like isoform X3
Swissprot	O82799	6e-66	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	A0A2P5FHA8	2e-94	A0A2P5FHA8_TREOI; B3 DNA binding domain containing protein
STRING	XP_010107127.1	2e-68	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2338	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61970.1	3e-64	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]