PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK21144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TALE | ||||||||
Protein Properties | Length: 646aa MW: 72819.8 Da PI: 6.2296 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.4 | 6.8e-10 | 415 | 452 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gLt++qV +WF N R + PK21144.1 415 FEHflHPYPKESEKVVLAKQTGLTTKQVANWFINARVR 452 664459******************************88 PP | |||||||
2 | BELL | 108.5 | 4.1e-35 | 281 | 352 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+lq+kk+kL+s+l+ +d++Ykqy++q+qtv+s + vag g+a+pYtslA+k+iSrhFrcL+d i++qi PK21144.1 281 EQQDLQSKKSKLMSMLDDIDRKYKQYYNQMQTVVSFLDNVAGRGAAEPYTSLAQKTISRHFRCLRDGISGQI 352 6899******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.9E-47 | 205 | 350 | IPR006563 | POX domain |
Pfam | PF07526 | 5.5E-43 | 215 | 349 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 393 | 456 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-9 | 396 | 460 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.67E-11 | 396 | 457 | No hit | No description |
SuperFamily | SSF46689 | 3.46E-17 | 397 | 463 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 399 | 462 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.2E-17 | 413 | 452 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MATYVPNQSL NKKCDLASST TTAAYHENDH EAFVTSLNQS TSPTEPFSMS FHGSSNYCVD 60 SSQGRNEMMF IPTIATDSVL NGDSLADHQN NNLHYQGQGL SLSLGKQIHE SPVSLTSFLH 120 DNQYHYSSNP SLSSDHMGTC LTSNNMGMGL GTNQQNVESF NIMASGFLGI NNNNSIKTEC 180 FGNQIMHQSE RYHDQYDQPS YGFNNNNNNN GLNFKYLKAV QELLDEVVNV RKALNKNQNN 240 HKFQGIGSDH GLKESDLKSN TQSADPSEST ANSSCELSQT EQQDLQSKKS KLMSMLDDID 300 RKYKQYYNQM QTVVSFLDNV AGRGAAEPYT SLAQKTISRH FRCLRDGISG QIQAIQRRLG 360 EQDNGQNTAI PRLRYVDLKL RQQRGFNQLA AMRHAWRPQR GLPETSVSIL RAWLFEHFLH 420 PYPKESEKVV LAKQTGLTTK QVANWFINAR VRLWKPMVEE MYKEEFNDLE MNSKEGGEGG 480 GGGGRVDSSC EEDKIRGEYL NPLETHQNRR LRHETNVTDS ETTKSPVDNN AGFYLEEDEA 540 VRTSTTANTT TNQNHQNQAS YDDISELSSI VVRNDRHVSL ALELRHCESE GFSTLGGSHN 600 MRGDDESASQ ASLDYHCLET EQQERRRFSS NPHLLHDFVV CHLKNX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 4e-17 | 402 | 460 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-17 | 402 | 460 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 4e-17 | 402 | 459 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-17 | 402 | 459 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010110017.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A2P5EZK2 | 0.0 | A0A2P5EZK2_TREOI; Homeodomain transcription factor | ||||
STRING | XP_010110017.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75410.2 | 1e-103 | BEL1-like homeodomain 3 |