PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21094.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB_related

Protein Properties

Length: 467aa MW: 52052.4 Da PI: 9.8264

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21094.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.1e-08	129	172	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE ++l ++kq+ + + Ia ++++ Rt +++k+r++++ PK21094.1 129 AWTKEETDQLFSLCKQFDLR-FIIIADRFPTSRTVEELKDRYYNV 172 7*****************.********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	3.8E-32	102	176	IPR032563	DAMP1, SANT/Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.7E-7	125	174	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-7	126	177	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-8	126	175	IPR001005	SANT/Myb domain
CDD	cd11658	5.60E-19	130	173	No hit	No description
Pfam	PF05499	1.6E-7	321	385	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MDAKDILGLP KNALPVAQEK KSRPQKDSHR KPDGISREVY ALTGGVPPLM PSIDLSQLRK 60 RPPADEKITW QWLPFTSSAR KDNLQLYHWV RVVNGAPPTG DYSFAKYNKS VDIVQYTDEE 120 YEKHLTDPAW TKEETDQLFS LCKQFDLRFI IIADRFPTSR TVEELKDRYY NVCRALVVAR 180 APSPVDVSGH PVVKEPYNVS QEKERKRALS MVLSQTKLQE KKDVEVLSEA KKITESRLAA 240 KVAEEVELPV ASNVATENTE KTTIPGDIVS PSPSVPVPSA VVAAVPSTLA ADNAATVASL 300 RMLRVYLRTY ALDQMIQAAS ASAGLRTIKR VEQTLQELGV NLKPRVPTKA VCAEHLELRK 360 EILTLLNLQK QVQYKETENS SFRDNPYEAP GTPKDRMFVP DSMNFGVSGE RPGKRDQKRK 420 GPGRGSEAPS SPAQSNKRPR KLKASDLCSL ELRWQNISLL NGTGGRA

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MDAKDILGLP KNALPVAQEK KSRPQKDSHR KPDGISREVY ALTGGVPPLM PSIDLSQLRK  60
RPPADEKITW QWLPFTSSAR KDNLQLYHWV RVVNGAPPTG DYSFAKYNKS VDIVQYTDEE  120
YEKHLTDPAW TKEETDQLFS LCKQFDLRFI IIADRFPTSR TVEELKDRYY NVCRALVVAR  180
APSPVDVSGH PVVKEPYNVS QEKERKRALS MVLSQTKLQE KKDVEVLSEA KKITESRLAA  240
KVAEEVELPV ASNVATENTE KTTIPGDIVS PSPSVPVPSA VVAAVPSTLA ADNAATVASL  300
RMLRVYLRTY ALDQMIQAAS ASAGLRTIKR VEQTLQELGV NLKPRVPTKA VCAEHLELRK  360
EILTLLNLQK QVQYKETENS SFRDNPYEAP GTPKDRMFVP DSMNFGVSGE RPGKRDQKRK  420
GPGRGSEAPS SPAQSNKRPR KLKASDLCSL ELRWQNISLL NGTGGRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	1e-22	101	186	4	93	DNA methyltransferase 1-associated protein 1
4iej_A	1e-22	101	186	4	93	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010094407.2	0.0	SWR1-complex protein 4
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	W9R6Q2	0.0	W9R6Q2_9ROSA; DNA methyltransferase 1-associated protein 1
STRING	XP_010094407.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4975	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]