PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20816.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 493aa    MW: 53605.4 Da    PI: 8.7274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20816.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.4e-15315360555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  PK20816.1 315 HNQSERKRRDKINQRMTTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 360
                9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-19308376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.714310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-18315369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-13315360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-17315364No hitNo description
SMARTSM003532.1E-18316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSQCVPSWDL DDSTSVPAAS RLSLRSRSNS TATDVPLLDY EVAELTWENG QITMHGLGPP  60
RVPNKNIGTN WPEKPRAGGT LESIVNQATR PSTLSLPYKP HGMPTAAARE ELVPWMKGHQ  120
GSAPPAAAQD NTATMDAQVP CSDPVKSRNN DRIKDSVVVP GFGTCHGQRG IVSYTQVASC  180
SGAVSTQEEI NNKTTGGFVV PDQKRESRTV VQTTARECPG DQSMSGTSAT FGTGNQPLRL  240
DSCDRDVGLG YPSTSMGSPE HVSSDKRSRK RTTADDHNSF CHSRSQRESG DDEDKKKGTG  300
KSSASTKRSR AAAIHNQSER KRRDKINQRM TTLQKLVPNS SKTDKASMLD EVIDYLKQLQ  360
AQVQMMNRMN MPAAMMLPMA MQQQLQMSMM NSLAGMGMGM GMTMDTMGRP NLPGINPILH  420
PNPFMPMNAW DHGSASAAAA DQSRLQPQLP PVIPDHLASF FACQPQSMTP EAYSRMAAMY  480
QQLHQPPTST SKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318323ERKRRD
2319324RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021677931.11e-161transcription factor UNE10-like
TrEMBLA0A2P5C9N30.0A0A2P5C9N3_TREOI; Basic helix-loop-helix transcription factor
STRINGcassava4.1_007418m1e-154(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-70bHLH family protein