PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK20811.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

CAMTA

Protein Properties

Length: 915aa MW: 103158 Da PI: 7.1514

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK20811.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.1	5e-51	29	143	4	118
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103 +rwl+++ei+a+L n++ ++++ ++ + pk g+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++ ptf rrcywlL+ PK20811.1 29 APSRWLRPNEIYAMLSNYKYFTIHVKPMNLPKGGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEEKIHVYYAHGQDSPTFVRRCYWLLN 128 479*********************************************************************************************** PP CG-1 104 eelekivlvhylevk 118 ++le+ivlvhy+e++ PK20811.1 129 KSLEHIVLVHYRETQ 143 **********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.404	22	148	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-69	25	143	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-44	29	141	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.68E-15	369	456	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.4E-6	370	455	IPR002909	IPT domain
Pfam	PF12796	8.7E-8	556	634	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.46E-16	560	664	No hit	No description
SuperFamily	SSF48403	2.33E-18	563	667	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.2E-17	563	668	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.263	572	676	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.3E-6	605	634	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.048	605	637	IPR002110	Ankyrin repeat
SMART	SM00248	3700	644	674	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.83E-9	692	819	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.053	753	779	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	33	768	790	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.364	769	798	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0087	791	813	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.761	792	816	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0023	794	813	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MEGGQLVDSN IHGFHTLQDL DVPTIMAEAP SRWLRPNEIY AMLSNYKYFT IHVKPMNLPK 60 GGTIVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEEKIHVYY AHGQDSPTFV 120 RRCYWLLNKS LEHIVLVHYR ETQESQGSPI TPLHTPVYSH SSSSPDPHAR ILSDELDSGT 180 KNAHYDAGEE HLESGNTSTD KIYEQSLHDI NTLEWDELLD PNDPINSALG AHTVSCFNQQ 240 NQGVGNGFSS GGAMHSSFDH STNPNAMSGN MPGDLQNSVY VQNMGAQMNS DFQKRDSVGV 300 VTGESDLLAN NGLQSQDSFG RWIDGILIES PGSVIDPLLE TSILPAQDSF VSPATGHNLQ 360 SSVQEHMFNI TDVSPEWAYS NEKTKILVTG FFHEQYQQFA KYNLLCVCGD VCVPAEFIQI 420 GVYRCLVPPH SPGFVNLFLS VDGHKPISQI VNLEYRAPVI SEPVTTLDVK NNWDKFRLQM 480 RLAHLLFSSS KCLNILSSKV SPITLKEAKK FVEKIPNFPK AWDKFINSTG DGKTLFPQAQ 540 DKLFNLILRD RLKDWLVEKV IEGSKPTEFD VHGQSIIHLC AILGYSWAIH LFSMAGLSLD 600 FRDKHGWTAL HWAAYNGNDK MVAVLLTLGA KPNLVTDPTS ANPDGCTAGD LALLMGHEGL 660 AGYLSEKALV EQFKDMTIAG NASGTLDTNA NDTVYPETLS EEQVYLKDTL AAYRNAADAA 720 ARIQVAFREH SLKVRTKAVE GSSPEEEARS IIAAMKIQHA FRNFETRKKI QAAARIQYRF 780 RSWKIRRDFL NLRRQTIKIQ AAFRGFQVRR QYRKILWSVG VLEKLVLRWR LKRKGFRGLQ 840 VPPVEEQGRE SDTEEDFYKA SQKQAGERVG RSMVQVKNMF ASTKAQEEYH RMKVAHNQVK 900 LEYEDLFDPD SDITS

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MEGGQLVDSN IHGFHTLQDL DVPTIMAEAP SRWLRPNEIY AMLSNYKYFT IHVKPMNLPK  60
GGTIVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEEKIHVYY AHGQDSPTFV  120
RRCYWLLNKS LEHIVLVHYR ETQESQGSPI TPLHTPVYSH SSSSPDPHAR ILSDELDSGT  180
KNAHYDAGEE HLESGNTSTD KIYEQSLHDI NTLEWDELLD PNDPINSALG AHTVSCFNQQ  240
NQGVGNGFSS GGAMHSSFDH STNPNAMSGN MPGDLQNSVY VQNMGAQMNS DFQKRDSVGV  300
VTGESDLLAN NGLQSQDSFG RWIDGILIES PGSVIDPLLE TSILPAQDSF VSPATGHNLQ  360
SSVQEHMFNI TDVSPEWAYS NEKTKILVTG FFHEQYQQFA KYNLLCVCGD VCVPAEFIQI  420
GVYRCLVPPH SPGFVNLFLS VDGHKPISQI VNLEYRAPVI SEPVTTLDVK NNWDKFRLQM  480
RLAHLLFSSS KCLNILSSKV SPITLKEAKK FVEKIPNFPK AWDKFINSTG DGKTLFPQAQ  540
DKLFNLILRD RLKDWLVEKV IEGSKPTEFD VHGQSIIHLC AILGYSWAIH LFSMAGLSLD  600
FRDKHGWTAL HWAAYNGNDK MVAVLLTLGA KPNLVTDPTS ANPDGCTAGD LALLMGHEGL  660
AGYLSEKALV EQFKDMTIAG NASGTLDTNA NDTVYPETLS EEQVYLKDTL AAYRNAADAA  720
ARIQVAFREH SLKVRTKAVE GSSPEEEARS IIAAMKIQHA FRNFETRKKI QAAARIQYRF  780
RSWKIRRDFL NLRRQTIKIQ AAFRGFQVRR QYRKILWSVG VLEKLVLRWR LKRKGFRGLQ  840
VPPVEEQGRE SDTEEDFYKA SQKQAGERVG RSMVQVKNMF ASTKAQEEYH RMKVAHNQVK  900
LEYEDLFDPD SDITS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019984.1	0.0	calmodulin-binding transcription activator 5
Refseq	XP_024019986.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2P5F618	0.0	A0A2P5F618_TREOI; Notch
STRING	XP_008223308.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]