PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20670.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 92aa MW: 10626.4 Da PI: 6.6828 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 32.8 | 9.4e-11 | 4 | 90 | 257 | 350 |
GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 f +++ey + +++s+++ + + r + Er+l++ e+ + ++++g++ +e +ekW er++ aGF +++e+a + ++llrk++ ++++r PK20670.2 4 FPRKVEYLWRFLESTSSAF----KGRESEERRLMEGEAAKGLTNRGEM----NEGKEKWCERMRGAGFVGESFGEEAIDGGRALLRKYDsNWEMR 90 66789999*******7775....7777888888888899999999988....9***********************************9666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 3.2E-8 | 4 | 90 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
XCGFPRKVEY LWRFLESTSS AFKGRESEER RLMEGEAAKG LTNRGEMNEG KEKWCERMRG 60 AGFVGESFGE EAIDGGRALL RKYDSNWEMR VX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020416376.1 | 9e-52 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 3e-44 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | M5X941 | 2e-50 | M5X941_PRUPE; Uncharacterized protein | ||||
STRING | EMJ18028 | 3e-51 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 6e-38 | GRAS family protein |
Publications ? help Back to Top | |||
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