PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 542aa MW: 60481.9 Da PI: 6.8215 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 242.3 | 2e-74 | 158 | 534 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL cA+a+++g+ ++q+lL l+elas +gd+++Rla++ ++AL ++l++s s + a + + s+ + ++l +sevsP++ f + ++N+ PK20670.1 158 EQLLNPCATAITEGNCMRVQHLLYVLHELASLTGDANHRLAFHGLRALTHHLSSSPSVSAPAAGCVTFSTAEPRFFQKSLIKLSEVSPWFAFPNNITNSC 257 689**************************************************95444455558888887777777777777****************** PP GRAS 102 Ileavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledle 190 Il+ +++e + +Hi+D+++s+G+QWp Ll+aL+ R ++pp +RiT ++ +++ + + rL +A+++++++e+n l + l++l+ PK20670.1 258 ILQLLNEEndrtRSLHILDIGVSHGIQWPILLEALSRRLgGPPPLVRITIIAGTDQNndtafsKGPPGDNFSTRLLIYAKSININLEINRLDNQPLQNLN 357 *****9998877889************************55666*****99886666678898888999*********************9999****** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvEr 287 + ++ +++E+l+++ +++lh+l +++++er+e+Lk++++++Pk ++++e++ +++ n ++F+ +f++++ey + +++s+++ + + r + Er PK20670.1 358 AQIINSSEDETLIICAQFRLHHLN---HNTPNERTEFLKTLRKMEPKGIILSENNteCSCsNCGNFACGFSRKVEYLWRFLESTSSAF----KGRESEER 450 ***********************8...77788889******************98445667889********************7775....77777888 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l++ e+ + ++++g++ +e +ekW er++ aGF +++e+a + ++llrk++ ++++rvee++g + l Wk++p+ ++S W+ PK20670.1 451 RLMEGEAAKGLTNRGEM----NEGKEKWCERMRGAGFMGESFGEEAIDGGRALLRKYDsNWEMRVEEKDGFVGLWWKGQPVSFCSLWK 534 88888899999999988....9************************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.562 | 131 | 513 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.0E-72 | 158 | 534 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MDWLEDSVSF LPSFLDDPYQ SAEISGYPWW DERQDIIGHD LLHTINTSVY SPPTTATVTA 60 TATIITTTTS PPDSTISNLL PLPNSSKKRK TADGPIPKTS QNHHNPRKNQ GRQTNQVEDG 120 DTAVEEVVAV RKTVGNKRNS GKGAGNNNCN NKEGRWAEQL LNPCATAITE GNCMRVQHLL 180 YVLHELASLT GDANHRLAFH GLRALTHHLS SSPSVSAPAA GCVTFSTAEP RFFQKSLIKL 240 SEVSPWFAFP NNITNSCILQ LLNEENDRTR SLHILDIGVS HGIQWPILLE ALSRRLGGPP 300 PLVRITIIAG TDQNNDTAFS KGPPGDNFST RLLIYAKSIN INLEINRLDN QPLQNLNAQI 360 INSSEDETLI ICAQFRLHHL NHNTPNERTE FLKTLRKMEP KGIILSENNT ECSCSNCGNF 420 ACGFSRKVEY LWRFLESTSS AFKGRESEER RLMEGEAAKG LTNRGEMNEG KEKWCERMRG 480 AGFMGESFGE EAIDGGRALL RKYDSNWEMR VEEKDGFVGL WWKGQPVSFC SLWKLNHQPT 540 PT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-33 | 154 | 534 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 1e-33 | 154 | 534 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 1e-33 | 154 | 534 | 30 | 419 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010086812.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2P5ETQ9 | 0.0 | A0A2P5ETQ9_TREOI; GRAS transcription factor | ||||
STRING | XP_010086812.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-158 | GRAS family protein |
Publications ? help Back to Top | |||
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