PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | G2-like | ||||||||
Protein Properties | Length: 544aa MW: 59599.3 Da PI: 7.319 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7.4e-32 | 318 | 373 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ PK20621.1 318 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 373 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.045 | 315 | 375 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.47E-17 | 316 | 376 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 316 | 376 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-26 | 318 | 373 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-6 | 320 | 371 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MASPSELSLE CKPAHSYSML LKSFGEHQHQ QHHHLQQQQQ QQHQVPHQHD HTHKLEDYLN 60 RLEEERLKID AFKRELPLCM QLLTNAVEAS RQQLQTYRAN QGPIRPVLEE FIPLKTSSSE 120 GSADQKITNA PDNKANWMTS AQLWSQTSSN DGSKPQPTNN INNSTNNNSV TTKEGDISFN 180 VVSSSPKLAL DNKLSQRLNG PAGAFLPFSK DNINNRTNNQ SFRPLPELAL SASVADQKDI 240 IVGEENHKCS SEAERRENSG NNNGNCGGVI VEMGKGGVAG NNNCSNINGS DHHHQGVQTI 300 NTNNNSSSTS NNNQAHRKAR RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN 360 DEVKSHLQKY RLHTRRPSPS PQAAGAPAPQ LVVLGSIWVP PEYAAAAAHS GAQTTLYSSH 420 AASHAPPPHY CASPVPQDFY ASQAHHQAQA QAQAQGVPHH QLHHHHALHH QLQMYKATSQ 480 THSSPETDGR GAAGGDRSES IEDGKSESSS WKGESGDNGG ERKGLAALRE EGEESNGSEI 540 TLKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 318 | 371 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 318 | 371 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-13 | 318 | 371 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 318 | 371 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 318 | 371 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 318 | 371 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 318 | 371 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 318 | 371 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 318 | 371 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 318 | 371 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 318 | 371 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 318 | 371 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098958.1 | 0.0 | myb family transcription factor EFM | ||||
TrEMBL | A0A2P5AZB1 | 0.0 | A0A2P5AZB1_TREOI; GARP transcription factor | ||||
STRING | XP_010098958.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5466 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-94 | G2-like family protein |