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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PK20581.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 85aa MW: 9814.15 Da PI: 8.8548 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 40.6 | 3.3e-13 | 1 | 29 | 16 | 44 |
HHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstg 44
R+ ++KKA+ELS+LC+++v++i++ s +
PK20581.1 1 RKSCLIKKAYELSTLCNVKVCLIVYDSMN 29
999*********************97755 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF00319 | 4.5E-11 | 1 | 27 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 9.81E-12 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 10.933 | 1 | 30 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 85 aa Download sequence Send to blast |
RKSCLIKKAY ELSTLCNVKV CLIVYDSMNQ SSDPIATWPE NPHEIRSLIN DYKTAMAQKP 60 DSKRLHTIAD FIKEKIKKVN TEIEX |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | W9SAQ3 | 1e-19 | W9SAQ3_9ROSA; MADS-box protein | ||||
| STRING | XP_010112364.1 | 2e-20 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF21862 | 2 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G27050.1 | 3e-11 | AGAMOUS-like 101 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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