PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 420aa MW: 47141.5 Da PI: 5.5684 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83.1 | 3.6e-26 | 95 | 177 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++le PK20543.1 95 WVQEETRSLIGFRREVDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--SRSAKMSYYEDLE 177 ********************************************************************98..45568******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 85 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.386 | 87 | 151 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0054 | 91 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.49E-28 | 93 | 158 | No hit | No description |
Pfam | PF13837 | 2.7E-19 | 94 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MYLSSEKTRS VDFYKEGVGG GGGGGGGGGE EEESDRDMMM EVVVTNGVLG SHPRNQTQNQ 60 NQNQNQLQQQ MILGENSSGG EEHEVKAPKK RAETWVQEET RSLIGFRREV DGLFNTSKSN 120 KHLWEQISSK MREKGFDRSP TMCTDKWRNL LKEFKKARHQ VKVGSRSAKM SYYEDLEELL 180 RDRNKNSSST TTVSTSAYKS HTPPPKVDSF IHFSDKGLED ANIPFGPIGA TDRSAVNLER 240 RLDHDGDPLA ITAADAVVAS GVPPWNWREA PGNGAENPPP FCGRIITVKL GEYSKRIGID 300 GSAEAIKEAI KSAFRIRTKR AFWLEDEDEV VRSLDRDMPL GNYTLHLDEG ITIKLCFYDE 360 SNRGVVRDEA VTFYTEDDFR DFLTRRGLTG FRELSGYRCI DCLDDLQSGA MYQGVRLLVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 2e-44 | 89 | 175 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00141 | DAP | Transfer from AT1G13450 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111631.1 | 0.0 | trihelix transcription factor GT-4 | ||||
Swissprot | Q9FX53 | 1e-165 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A2P5FBY0 | 0.0 | A0A2P5FBY0_TREOI; C2H2-zinc finger protein family | ||||
STRING | XP_010111631.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6817 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-162 | Trihelix family protein |
Publications ? help Back to Top | |||
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