PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20526.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 533aa    MW: 59055.4 Da    PI: 6.0341
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20526.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS165.35.2e-513805281152
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL++cA+av+++d++ a++lL+++++++sp gd  qRla++f+ +L+arla+++s++yk l  ++ts    ++ l+a++l+  ++P+ k+s++t N+
  PK20526.2 380 LRSLLIQCAQAVAADDHRSANELLKQVRQHSSPFGDGSQRLASCFADGLEARLAGTGSQIYKGLVNKRTS---AADILKAYRLYLAACPFRKISNFTSNR 476
                689*************************************************************999998...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152
                +Il+  ++++ vH+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++
  PK20526.2 477 TILDTSAKATSVHVIDFGILYGFQWPTLIQRLSMREGGPPKLRITGIEFPQP 528
                ***********************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.661354533IPR005202Transcription factor GRAS
PfamPF035141.8E-48380528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDQSLRGYTG SGNGVIHFGK GKPLSVISSH NNIMAETRFN NHNHNAFSDH SHMGFHYPQP  60
DLTPAIENTI STLSHDVNSP EDCDFSDTVL QYISQMLMEE EDHEDKTSIV EESSDLRAAE  120
KSFYEVLGKK YPPSPEQNHV FQNGESLEEN FTTSSNNYVH SSCYSNEYLV DNPLYQNLDN  180
YTSQLHCIPE FGVSQSSYSS SNSAISSLDG LLDSPNSTII QAPDLCSENR SMWQFRKGVE  240
EASRFLPTQN DLVGSVEANE LLALVPSKFG TSDVSVKSND ECSPGSSRGR KHPYSDVEDL  300
EDERSSKQAA IYIESTLRSK MFDLVLLCSL GDGHEHLTSF RADLQSDLTK SMQQTGQIKG  360
LSGGKSRGKR QVKKKEVVDL RSLLIQCAQA VAADDHRSAN ELLKQVRQHS SPFGDGSQRL  420
ASCFADGLEA RLAGTGSQIY KGLVNKRTSA ADILKAYRLY LAACPFRKIS NFTSNRTILD  480
TSAKATSVHV IDFGILYGFQ WPTLIQRLSM REGGPPKLRI TGIEFPQPGF RPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-283635231164Protein SCARECROW
5b3h_D2e-283635231164Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111448.20.0scarecrow-like protein 9
RefseqXP_024031224.10.0scarecrow-like protein 9
TrEMBLA0A2P5DVS60.0A0A2P5DVS6_TREOI; GRAS transcription factor
STRINGXP_010111448.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-112GRAS family protein