PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK20526.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 753aa MW: 84914.5 Da PI: 6.5138

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK20526.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	386.2	3.8e-118	380	751	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+av+++d++ a++lL+++++++sp gd qRla++f+ +L+arla+++s++yk l ++ts ++ l+a++l+ ++P+ k+s++t N+ PK20526.1 380 LRSLLIQCAQAVAADDHRSANELLKQVRQHSSPFGDGSQRLASCFADGLEARLAGTGSQIYKGLVNKRTS---AADILKAYRLYLAACPFRKISNFTSNR 476 689***********************************************************999998...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Il+ ++++ vH+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g +e++ etg+rL+ +Ae+++v+f++++ +ak++e+++leeL++++ PK20526.1 477 TILDTSAKATSVHVIDFGILYGFQWPTLIQRLSMREGGPPKLRITGIEFPQPGfrPAERVDETGRRLKAYAETFNVTFDYHA-IAKKWETITLEELKIDK 575 ************************************************9*************************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 ++ l+Vn+ ++ ++l+desv+ es+r++vL+l+k+++P+++++ + +n++ F++rf eal ++salfd+le +pr + er+ +E+e++gre+ nv+ PK20526.1 576 NDFLVVNCLYRGKNLPDESVTAESARNRVLDLIKRIKPDLFIHGITNGAYNAPFFVTRFREALFHFSALFDMLELIVPRWEPERMLIEKEIFGREALNVI 675 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg er+er et+++W+ r++++GF + pls +++k a +++++ + + ++e++g+l++gWk+r ++++S+W+ PK20526.1 676 ACEGCERVERPETYKQWQIRIMRSGFVQQPLSRYVMKRAAEKVKTTYHRDFIIDEDNGWLLQGWKGRIIFAISSWK 751 *******************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.58	354	731	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-115	380	751	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MDQSLRGYAG SGNGVIHFGK GKPLSVISSH NNIMAETRFN NHNHNAFSDH SHMGFHYPQP 60 DLTPAIENTI STLSHDVNSP EDCDFSDTVL QYISQMLMEE EDHEDKTSIV EESSDLRAAE 120 KSFYEVLGKK YPPSPEQNHV FQNGESLEEN FTTSSNNYVH SSCYSNEYLV DNPLYQNLDN 180 YTSQLHCIPE FGVSQSSYSS SNSAISSLDG LLDSPNSTII QAPDLCSENR SMWQFRKGVE 240 EASRFLPTQN DLVGSVEANE LLALVPSKFG TSDVSVKSND ECSPGSSRGR KHPYSDVEDL 300 EDERSSKQAA IYIESTLRSK MFDLVLLCSL GDGHEHLTSF RADLQSDLTK SMQQTGQIKG 360 LSGGKSRGKR QVKKKEVVDL RSLLIQCAQA VAADDHRSAN ELLKQVRQHS SPFGDGSQRL 420 ASCFADGLEA RLAGTGSQIY KGLVNKRTSA ADILKAYRLY LAACPFRKIS NFTSNRTILD 480 TSAKATSVHV IDFGILYGFQ WPTLIQRLSM REGGPPKLRI TGIEFPQPGF RPAERVDETG 540 RRLKAYAETF NVTFDYHAIA KKWETITLEE LKIDKNDFLV VNCLYRGKNL PDESVTAESA 600 RNRVLDLIKR IKPDLFIHGI TNGAYNAPFF VTRFREALFH FSALFDMLEL IVPRWEPERM 660 LIEKEIFGRE ALNVIACEGC ERVERPETYK QWQIRIMRSG FVQQPLSRYV MKRAAEKVKT 720 TYHRDFIIDE DNGWLLQGWK GRIIFAISSW KAA

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MDQSLRGYAG SGNGVIHFGK GKPLSVISSH NNIMAETRFN NHNHNAFSDH SHMGFHYPQP  60
DLTPAIENTI STLSHDVNSP EDCDFSDTVL QYISQMLMEE EDHEDKTSIV EESSDLRAAE  120
KSFYEVLGKK YPPSPEQNHV FQNGESLEEN FTTSSNNYVH SSCYSNEYLV DNPLYQNLDN  180
YTSQLHCIPE FGVSQSSYSS SNSAISSLDG LLDSPNSTII QAPDLCSENR SMWQFRKGVE  240
EASRFLPTQN DLVGSVEANE LLALVPSKFG TSDVSVKSND ECSPGSSRGR KHPYSDVEDL  300
EDERSSKQAA IYIESTLRSK MFDLVLLCSL GDGHEHLTSF RADLQSDLTK SMQQTGQIKG  360
LSGGKSRGKR QVKKKEVVDL RSLLIQCAQA VAADDHRSAN ELLKQVRQHS SPFGDGSQRL  420
ASCFADGLEA RLAGTGSQIY KGLVNKRTSA ADILKAYRLY LAACPFRKIS NFTSNRTILD  480
TSAKATSVHV IDFGILYGFQ WPTLIQRLSM REGGPPKLRI TGIEFPQPGF RPAERVDETG  540
RRLKAYAETF NVTFDYHAIA KKWETITLEE LKIDKNDFLV VNCLYRGKNL PDESVTAESA  600
RNRVLDLIKR IKPDLFIHGI TNGAYNAPFF VTRFREALFH FSALFDMLEL IVPRWEPERM  660
LIEKEIFGRE ALNVIACEGC ERVERPETYK QWQIRIMRSG FVQQPLSRYV MKRAAEKVKT  720
TYHRDFIIDE DNGWLLQGWK GRIIFAISSW KAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-50	363	750	1	377	Protein SCARECROW
5b3h_D	2e-50	363	750	1	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010111448.2	0.0	scarecrow-like protein 9
Refseq	XP_024031224.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2P5DVS6	0.0	A0A2P5DVS6_TREOI; GRAS transcription factor
STRING	XP_010111448.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein