PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK20470.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 651aa MW: 74871.6 Da PI: 7.1253

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK20470.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367	2.5e-112	283	651	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lL++cA+av+s d++ a+ l +++++++spdg ++qRla+yf+++L+arl+++++ ly+ l ++e s +++ l ++l+ ++P+l++s+ aN++I PK20470.1 283 TLLTQCAQAVASYDQRTATDLFKQIRQHSSPDGAATQRLAHYFANGLEARLVGTSKVLYSPLVSNEMS---VVDILRGHQLYITACPFLRMSYCFANRTI 379 69*************************************************999999998888888...************************* PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 ++ +++++++HiiDf+i++G+QWp L+q L++ p+gpp+lR+Tgv+ p++g +e++eet++rL++++++++vp e+n+ +ak++e++++e+L+++++E PK20470.1 380 MKLAKNAKTIHIIDFGIQYGFQWPGLIQRLSQTPGGPPKLRMTGVELPQPGfrPTERVEETKRRLENYCRRFNVPSEYNM-IAKKWETIHYEDLKINKDE 478 **********************************************9*************************.7************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 ++Vn++++l+++lde+v ++++rd+vLkl+++++P ++++ + +n++ Fl+rf eal +ys+lfd++++++pre++ r+ E+++ gr+i n++ac PK20470.1 479 LVVVNCMYRLKHILDETVVINNPRDTVLKLLRKINPALFIHGVYNGTYNAPFFLTRFREALLHYSSLFDMFDSTVPREERYRMEFEKAIYGRDINNIIAC 578 ************************************************************************************************ PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 eg er+er e++++W+ r +aGFk+ pl++++ + +k ++ + + + ve+ ++l++gWk+r+++++S+W PK20470.1 579 EGMERVERPESYKQWQVRNARAGFKQTPLDQETFEAVKKKVQLSYHKDFLVEQLGEWLMQGWKGRRIYALSCW 651 *****************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.509	255	632	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.8E-110	283	651	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MDTLLDEFVV SMNGFSYNSP NSIPFYSNQS YVRDAINNDH GGISQPCDYS NELHQHHACE 60 SSQNNSSSCS ELVDSPGYSD SFTATLKFIS EMLMEEEDLE RKSLMLEDPL ALQAAEKSFY 120 DVLGQNYPPS SSDKGDYVVS SKPFSSSVKT SFDHTHLVQG PIFGEPTTSV FFQKGNTQMI 180 DLDKDGVCLQ RGKKNHQGEF GDGNSEEEVR SAKQAAVKGD DFEPTEMLDK VLLNHGENEF 240 AKKLQQQQQQ QQHEVKQQGK RSGRMRRSKK QDKDKTDMVD LWTLLTQCAQ AVASYDQRTA 300 TDLFKQIRQH SSPDGAATQR LAHYFANGLE ARLVGTSKVL YSPLVSNEMS VVDILRGHQL 360 YITACPFLRM SYCFANRTIM KLAKNAKTIH IIDFGIQYGF QWPGLIQRLS QTPGGPPKLR 420 MTGVELPQPG FRPTERVEET KRRLENYCRR FNVPSEYNMI AKKWETIHYE DLKINKDELV 480 VVNCMYRLKH ILDETVVINN PRDTVLKLLR KINPALFIHG VYNGTYNAPF FLTRFREALL 540 HYSSLFDMFD STVPREERYR MEFEKAIYGR DINNIIACEG MERVERPESY KQWQVRNARA 600 GFKQTPLDQE TFEAVKKKVQ LSYHKDFLVE QLGEWLMQGW KGRRIYALSC W

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MDTLLDEFVV SMNGFSYNSP NSIPFYSNQS YVRDAINNDH GGISQPCDYS NELHQHHACE  60
SSQNNSSSCS ELVDSPGYSD SFTATLKFIS EMLMEEEDLE RKSLMLEDPL ALQAAEKSFY  120
DVLGQNYPPS SSDKGDYVVS SKPFSSSVKT SFDHTHLVQG PIFGEPTTSV FFQKGNTQMI  180
DLDKDGVCLQ RGKKNHQGEF GDGNSEEEVR SAKQAAVKGD DFEPTEMLDK VLLNHGENEF  240
AKKLQQQQQQ QQHEVKQQGK RSGRMRRSKK QDKDKTDMVD LWTLLTQCAQ AVASYDQRTA  300
TDLFKQIRQH SSPDGAATQR LAHYFANGLE ARLVGTSKVL YSPLVSNEMS VVDILRGHQL  360
YITACPFLRM SYCFANRTIM KLAKNAKTIH IIDFGIQYGF QWPGLIQRLS QTPGGPPKLR  420
MTGVELPQPG FRPTERVEET KRRLENYCRR FNVPSEYNMI AKKWETIHYE DLKINKDELV  480
VVNCMYRLKH ILDETVVINN PRDTVLKLLR KINPALFIHG VYNGTYNAPF FLTRFREALL  540
HYSSLFDMFD STVPREERYR MEFEKAIYGR DINNIIACEG MERVERPESY KQWQVRNARA  600
GFKQTPLDQE TFEAVKKKVQ LSYHKDFLVE QLGEWLMQGW KGRRIYALSC W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-44	285	651	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106508.2	0.0	uncharacterized protein LOC21407972
Swissprot	Q9XE58	1e-169	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P5DQK5	0.0	A0A2P5DQK5_PARAD; GRAS transcription factor
STRING	XP_010106508.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-167	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]