PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20376.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 286aa    MW: 30334.7 Da    PI: 7.6315
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20376.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-086590227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               kt+ C++f     Ck+Gd+C+FaHg+
  PK20376.2 65 KTRVCNRFNSAEGCKFGDKCHFAHGE 90
               89**********************96 PP
2zf-CCCH37.83.2e-12253277126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykt+lC++f + GtC +GdrC+FaHg
  PK20376.2 253 YKTKLCDNFTK-GTCTFGDRCHFAHG 277
                9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.601126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4523IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-46390IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-126393IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-86394IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6386391IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-66590IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-16249283IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-8252278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.84252279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-9252282IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-10253277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEASRNLSNT AGCPFGESCH FLHYVPGGYN AVAQMMNLAP LVPPPSRNMG NQAPTLNGSS  60
ASSVKTRVCN RFNSAEGCKF GDKCHFAHGE WEIGKVVAPS HDDPRPMPPM PNRYSGRMEP  120
PQPPPGHAFS FGASATAKIS VDASLAGAXH LKGWCKLEAD MSLDEAKLAI REHESDPNLK  180
NIELEGTFEQ IKEASVMVRE LIVNVSMSAP GKPSGGPDHG HGHGHGGHGH GHGPGGQSHG  240
PGCQNHGPSG NNYKTKLCDN FTKGTCTFGD RCHFAHGATE LRKTGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860219.11e-118PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-83C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2P5BTU01e-134A0A2P5BTU0_PARAD; Polyribonucleotide nucleotidyltransferase
TrEMBLA0A2P5E6331e-134A0A2P5E633_TREOI; Polyribonucleotide nucleotidyltransferase
STRINGXP_010102543.11e-112(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-44C3H family protein