PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20264.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 390aa    MW: 42849.4 Da    PI: 8.3431
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20264.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.5e-32185238255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PK20264.1 185 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 238
                9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-15182239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-28183239IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-23185238IPR006447Myb domain, plants
PfamPF002492.7E-7186237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MMRRTSITTA TTSSSSSSSS SSSMPDLSLQ ISPPSIPDYY HAITTTEANN NKNNSNEVLL  60
LRSSTTTDSG SSTTTGSDLS HENGLEIKTT ITTNCYNQEP TLSLGFETKD NNPPPPPVSV  120
VPAVLLHHLP RSSFNNTSTN NNISIDHHKY HFHGHQAQIY GRSGELMKRN PRSIGGVMKR  180
SVRAPRMRWT TTLHAHFVHA VQLLGGHERA TPKSVLELMN VKDLTLAHVK SHLQMYRTVK  240
STDKAAGQGQ GQTDLGLNQI RRVVGINNNN NKNIVNDEHE HVDGSDGVLS SEILAQPHLG  300
LPTNSHSHVS RPIERSISSH ENGWTVADHD QDFRENGAKV EKVSSGSSLS LSSSSNMRLN  360
LEFTLGRPSW QKDYAHHHDS SNEVLTLLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719892e-60KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097641.13e-87probable transcription factor KAN4 isoform X2
TrEMBLA0A2P5DA171e-102A0A2P5DA17_PARAD; KANADI transcription factor
STRINGXP_010097641.11e-86(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.12e-50G2-like family protein