PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK20257.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 550aa MW: 63883.2 Da PI: 6.9422

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK20257.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	364.3	1.7e-111	177	548	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lL++cAeav++ d++ a++ L r+++++sp gd++qRla+yf+++ +arl+++ + y+al +se s ++ l+a++++ ++P++++s+ aNq+I PK20257.1 177 TLLTHCAEAVADYDQRTATEQLRRIRQHSSPCGDATQRLAHYFANGFEARLTGKKTASYSALVSSEMS---FADILKAYQVYITACPFMRMSYSFANQTI 273 69**************************************************99999999999998...9************************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.. 198 + +++ + vHiiDf+i +G+QWp L+q L++ p+gpp+lRiTg++ p++g +e++eet++rL++f+e+++vp e+nv +a+++e++++e+L+++p PK20257.1 274 KKLAKNVRSVHIIDFGILYGFQWPELIQRLSKTPGGPPKLRITGIEIPQPGfrPSEKVEETKRRLENFCERFNVPSEYNV-IAQKWETIRYEDLNIDPdr 372 **********************************************9************************9.7***********999 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E ++Vn+ ++l++++de+v ++++rd+vLkl+++++P+++++ + ++++ F++rf e+l +ys lfd++++++pr++e r k E+++ gr+i+nv PK20257.1 373 DELVVVNCLYRLKHIPDETVVMNNPRDTVLKLIRRINPDLFIHGVVNGAYSAPFFMTRFKETLFHYSPLFDMFDTTVPRQEEYRLKFEKAVYGRDIENVM 472 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg er+er e++++W+ r +++GFk++pl++++ + +k + +++ + ve++ ++l++gWk+r+++ +S+W+ PK20257.1 473 ACEGLERVERPESYRQWQVRNTRVGFKQIPLDQEIFEAVKNTVDSSYDNNFVVEQHGEWLLQGWKGRRIYCLSFWK 548 *******************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.886	149	528	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.8E-109	177	548	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MEEEDLERKF LILEEPLALQ AAEKPFYDLL GQNYPLSSNK GENSSSDHVQ SVDHFRRRTG 60 EASSFCHMGK TQILDLESLE CNLLDEQKGK RSLEREYGES QEESRKSKQS AIYSDDSEAT 120 EIMFDRVLLY EGDTTQSTVS TVRQKSSQNH QAKGSGRKVR FPKKEGNAKK EMVDLWTLLT 180 HCAEAVADYD QRTATEQLRR IRQHSSPCGD ATQRLAHYFA NGFEARLTGK KTASYSALVS 240 SEMSFADILK AYQVYITACP FMRMSYSFAN QTIKKLAKNV RSVHIIDFGI LYGFQWPELI 300 QRLSKTPGGP PKLRITGIEI PQPGFRPSEK VEETKRRLEN FCERFNVPSE YNVIAQKWET 360 IRYEDLNIDP DRDELVVVNC LYRLKHIPDE TVVMNNPRDT VLKLIRRINP DLFIHGVVNG 420 AYSAPFFMTR FKETLFHYSP LFDMFDTTVP RQEEYRLKFE KAVYGRDIEN VMACEGLERV 480 ERPESYRQWQ VRNTRVGFKQ IPLDQEIFEA VKNTVDSSYD NNFVVEQHGE WLLQGWKGRR 540 IYCLSFWKPT

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MEEEDLERKF LILEEPLALQ AAEKPFYDLL GQNYPLSSNK GENSSSDHVQ SVDHFRRRTG  60
EASSFCHMGK TQILDLESLE CNLLDEQKGK RSLEREYGES QEESRKSKQS AIYSDDSEAT  120
EIMFDRVLLY EGDTTQSTVS TVRQKSSQNH QAKGSGRKVR FPKKEGNAKK EMVDLWTLLT  180
HCAEAVADYD QRTATEQLRR IRQHSSPCGD ATQRLAHYFA NGFEARLTGK KTASYSALVS  240
SEMSFADILK AYQVYITACP FMRMSYSFAN QTIKKLAKNV RSVHIIDFGI LYGFQWPELI  300
QRLSKTPGGP PKLRITGIEI PQPGFRPSEK VEETKRRLEN FCERFNVPSE YNVIAQKWET  360
IRYEDLNIDP DRDELVVVNC LYRLKHIPDE TVVMNNPRDT VLKLIRRINP DLFIHGVVNG  420
AYSAPFFMTR FKETLFHYSP LFDMFDTTVP RQEEYRLKFE KAVYGRDIEN VMACEGLERV  480
ERPESYRQWQ VRNTRVGFKQ IPLDQEIFEA VKNTVDSSYD NNFVVEQHGE WLLQGWKGRR  540
IYCLSFWKPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-44	179	548	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106508.2	0.0	uncharacterized protein LOC21407972
Swissprot	Q9XE58	1e-173	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P5D676	0.0	A0A2P5D676_TREOI; GRAS transcription factor
STRING	XP_010106508.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-171	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]