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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PK20225.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 262aa MW: 28578.4 Da PI: 9.414 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 39.4 | 1.1e-12 | 73 | 119 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+e+ErrRR+riN +++Lr+l+P++ +K++Ka+ L ++++ +k+L
PK20225.1 73 KNHSEAERRRRERINAHLATLRDLVPSN-----EKMDKATLLAEVIRQVKQL 119
58*************************9.....8*************99998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 16.05 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.5E-10 | 73 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 5.90E-4 | 73 | 121 | No hit | No description |
| SuperFamily | SSF47459 | 1.23E-13 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.4E-12 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd04873 | 9.33E-4 | 161 | 226 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 262 aa Download sequence Send to blast |
MASYSFSNIS YGSDYSSLFD PFSHTAAGFN GMFKGGSVPH SLVLDSKRGE LVKAPARVGK 60 KGLSEAKALA ALKNHSEAER RRRERINAHL ATLRDLVPSN EKMDKATLLA EVIRQVKQLK 120 KNAAEASKGL LIPADDDEVQ VQRFDDDNGA GNGNVLFKAC VCCSYRPELL SDLRQALKGL 180 PLQMIRTEIS TLGDRLNISF VFACSKGKSN DAETCRTLAS SVHETLNSVL DKASALAEYS 240 PRTTLLCKRR RISYLDSSSS SS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 78 | 83 | ERRRRE |
| 2 | 247 | 251 | KRRRI |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010103039.1 | 1e-107 | putative transcription factor bHLH107 | ||||
| TrEMBL | A0A2P5DKK4 | 1e-141 | A0A2P5DKK4_TREOI; Basic helix-loop-helix transcription factor | ||||
| STRING | XP_010103039.1 | 1e-106 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8986 | 31 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G68810.1 | 4e-32 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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